Colletotrichum lupini: CLUP02_16726
Help
Entry
CLUP02_16726 CDS
T08561
Name
(RefSeq) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
CLUP02_16726
Enzymes [BR:
clup01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
CLUP02_16726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
CarboxypepD_reg
SdrD_B
DUF6795
NOMO1-like_2nd
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
73350654
NCBI-ProteinID:
XP_049152791
UniProt:
A0A9Q8WQ94
LinkDB
All DBs
Position
9:join(2891384..2891520,2891728..2891987,2892055..2892503,2892561..2892689,2892752..2893726)
Genome browser
AA seq
649 aa
AA seq
DB search
MGIAEIRPCFDNVKFPKGLETLCSSYALLRESTVRTPYHELSGFDALRTCPKDSFQGFKI
MHFSRLSALALAGKLASAGKGPFLEQINDSTWVIGNDHWNLTQGWLYATKLFWEGVPGAD
LVGSAAGHYVGYDGENNLQFTNATIASRGTDYIDVSFSAAAGDFHWVIFDDLTGAYQYFV
NRALPDISILRTLWRLAPDVFLNGRTHLKDEPLPDFSLYATATNVQDETWQLADGSFITK
YDWSNAVRDRDFYGVYGPKAGSWYIHPTTEYYNSDHLSQTLTVHRESKTGDAVQLNVVQD
TSHFRVGKTVPQPAGKVWGPWLWYLNNGDVADAAEKHKEEVKHVPYTWFKDTAYHSRGGV
QGTLVLSDGRPASGAAVFLGDTDTTIRPSIQGKNYYYTTYTNDKGRFSFDNVRTGGYAVY
ATSNGGKLADVYTNFTAPLTITKDKTLNLGELSWTVPKSKQIFQIGEFDKKANGFKNGGV
PYQHGVAAKSPANLTFTVGKSQNEDWYFAQSAIGKWTIEFDIPSADLAANKTALLSVSLA
GYSQSAALDIDVNGQVYGSLSKDTLTSDPALYRSGKVSGEWRFFQYKIDTDVLKAGQNKS
KHPLLGTPPFWAPPKIPPSHHIKTLPIILIQHNNYKNRPNAFLFSTLTN
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcgcggagattcggccttgtttcgacaacgtcaagtttcccaagggactggaa
acactgtgttctagctatgctttgctgcgtgagtctacagtgcgaacgccttatcacgaa
ttgtcaggtttcgatgccttgagaacctgccccaaagacagctttcaaggcttcaagatc
atgcacttctctcggctgtccgcgttggctttggccggcaaattggccagtgccgggaag
ggtccctttctcgagcagattaatgactcgacctgggtcattggaaatgatcactggaac
ttgacacagggttggctctacgcaaccaagcttttctgggagggtgtcccgggcgccgat
cttgtgggttcggctgccggccactacgtcggctacgatggggagaacaatctccagttc
acaaacgccacaatcgcatcccgcggtacggactacatcgatgtcagcttctccgccgct
gccggtgacttccactgggtgatctttgacgacttgaccggcgcgtaccagtactttgtc
aaccgggccctccccgacattagcatcctccggactttgtggaggttggcccccgacgtc
ttcctcaacggtcgcacgcatctcaaagatgagcccctgcccgacttttcgctctacgcc
accgcgaccaatgtacaggatgagacctggcaactggccgatgggtccttcatcacaaag
tacgactggtccaatgctgtcagggatcgtgacttctacggcgtctacggccccaaagcc
gggtcgtggtacatccatcctacgacggagtactacaacagcgaccacctgagccaaact
ttgacggtccaccgagagtcaaagactggagatgcagtccagctcaatgtcgttcaggac
acttctcacttccgtgttggcaagacagtgcctcagccagcaggcaaggtctggggacct
tggttgtggtatctcaacaatggagacgtagcggacgccgcggaaaagcacaaggaggaa
gtcaaacacgtcccttacacatggttcaaggacacagcctaccactctcgtggcggagtc
cagggaactctggtcctctccgacggccgtcccgcctctggcgctgctgtcttcctcggt
gacaccgacacgaccatccgcccctcgattcagggcaagaactactactacacgacgtac
accaacgacaagggtcgattctccttcgacaatgttcgcactggcgggtacgccgtctac
gccacctccaacggtggcaagctggctgacgtctacacaaacttcactgcgcccctgacc
attacgaaggacaagacactgaacctcggcgagctctcgtggaccgtccccaaaagcaag
cagatcttccagatcggcgagttcgacaagaaggccaacggtttcaagaacggcggcgtg
ccctaccagcacggcgtggcggcgaagagccccgcaaacctgaccttcaccgtcggcaag
tcccagaacgaggattggtactttgcgcagtccgccatcggaaagtggacgatcgagttt
gacattccctcggcggacctcgctgcaaacaagactgcgctgctcagcgtgtcgctggct
gggtactcgcagagcgcggctttggacattgacgtcaacgggcaggtttacggctccctg
agcaaggacacgttgactagcgatcctgctctgtaccggtctggcaaggtgagcggcgag
tggcggttcttccagtacaagattgataccgacgttctcaaggctgggcagaataagtca
aagcacccacttttgggcaccccccccttttgggcacccccaaaaatccctcccagccac
cacattaaaaccctacctattattttaattcaacataacaattataaaaatcgtccaaat
gcattcctttttagcacacttactaattag
DBGET
integrated database retrieval system
