Colletotrichum lupini: CLUP02_17399
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Entry
CLUP02_17399 CDS
T08561
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
clup
Colletotrichum lupini
Pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_17399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_17399
03041 Spliceosome [BR:
clup03041
]
CLUP02_17399
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CLUP02_17399
Spliceosome [BR:
clup03041
]
Complex B
Other components
Prp19-related factors
CLUP02_17399
Complex C
CLUP02_17399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_8
Mad3_BUB1_I
RPN7
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
73351321
NCBI-ProteinID:
XP_049137535
LinkDB
All DBs
Position
10:join(662533..662589,662666..662836,662903..665143)
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AA seq
822 aa
AA seq
DB search
MPAPTLLNGSQRRPELHLVSDEDSVYEQDILRSPGSIKPWLAYIQFKSQHGTVHERAFVL
ERACLQLPRSYKLWKMYLTFRTKHVSKLNAAIFPAEYRKVNALFERALILLNKMPRIWQL
YLKFLLQQPLVTTTRRTFDRALRALPITQHNRIWALYKPFINSAAGISAVKVWRRYMQIH
PEDAEDFIELLVQVGFYTEAIKKYMDILNNPRFTSKQGKGHYELWSEMVDLMVEHAADIE
TGHETGIDVDRIVRSGIVRFADQRGKLWCGLATYWIRRGSFERARDVLEEAITTVMTVRD
FTLVFDSYTEFEESIIGALMEVASERADNGIVDEEADFELDIRMMRFEQLMDRRPFLLND
VVLRQNPNNVSEWEKRVALWGDNHLEVVQTYTAAIATIQPKKAVGAFHQLWANYAKFYER
GGDIRNARIIMEKAVKVPFKSVAELADMWIEWAEMELRNENFDDAVRIMAKAVQAPKRST
VDYFDETLSPQQRVHKSWKLWSFYVDLVESVSTVEDTRKVYERIFELRIATPQTVVNYAN
LLEEHQYYEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKIGIERLRDLFEQASEDCP
PKFAKVIYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLPST
RPIYEKAVSTLPDNEARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTSPAFWTKWE
SFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARSQRRPEDSGDAEVDDAMAAL
ERQARAPAGFVAASDATKMSSTLEAPPAPANPDAIDIDDLDE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcccacgcttctcaacggctctcagaggcggccggaactgcacctcgttagc
gacgaggactccgtatacgaacaggatatcctgcgaagccctggaagcatcaagccgtgg
cttgcctacattcagttcaagtcccaacatggaactgtacacgaacgcgctttcgtgctc
gaacgagcctgtctccaactcccccggtcttacaagctatggaagatgtatcttaccttt
cgcaccaagcacgtttcgaagctaaatgctgccattttccccgccgagtaccgaaaagtc
aatgccttattcgagcgcgcgctcattctgttgaacaaaatgcctcgcatctggcagcta
tatctgaagttcttgcttcagcagccgctggtcacgaccacccgacgcactttcgatcga
gcccttcgcgccttgccgattacccagcacaatcgaatctgggctctctacaagccgttc
atcaactctgctgcaggaatcagcgccgtcaaggtgtggcgccgctacatgcaaatacac
cccgaggacgccgaagacttcatcgagctccttgtgcaggtcggcttctacactgaagcc
atcaagaagtacatggacatcctcaacaatccgcgcttcactagcaagcaagggaaaggg
cactatgaactgtggagcgaaatggtggacttgatggtcgagcacgcggcggatattgaa
accggtcacgaaacgggtattgatgttgacaggatcgtcagaagcggcattgtcaggttc
gccgatcaacgaggaaaactctggtgcggcctagcgacttactggatccgacgaggcagc
ttcgagcgcgccagagatgtgctcgaggaagccatcaccacggtaatgacggtcagagac
ttcacgcttgttttcgattcgtacaccgagttcgaagagtccatcattggagccctaatg
gaggtagcctcggagcgtgccgacaacggtatcgtggacgaggaggcagatttcgaactc
gacatacggatgatgcggttcgagcaactcatggacagacggccattccttctcaacgac
gtagtcctgcgccagaaccccaacaacgtgtctgagtgggagaagagagtggctctctgg
ggcgacaaccatctcgaagtcgttcagacatacacagccgccatcgccacgatacaaccg
aaaaaggccgtcggggccttccatcagctttgggccaattacgccaaattctacgagcgt
ggtggtgacatacgcaatgcgcgcatcatcatggagaaagccgtcaaagtcccattcaag
tccgttgccgaattggctgatatgtggattgaatgggctgagatggaattgaggaacgag
aactttgacgatgccgtacgaatcatggccaaggctgtccaggcaccgaagagatccaca
gtcgactactttgacgagacgctatcgccgcagcagcgtgtgcacaagagctggaagctg
tggagtttctacgtggacctcgtggagagtgtcagcactgtggaggacacacgaaaggtt
tacgagcgcatctttgagctgcgaatcgcgacaccgcagacagtggtcaactatgcgaat
ctgctggaagagcaccagtactacgaagagtcgttcaagatttacgaacgtggcctggac
ctcttcagctacccagttgcctttgagctgtggaatctctaccttacaaaggccgtggat
cgcaagatcggtattgagcgtctgcgcgacctcttcgaacaggccagtgaagactgccca
cccaaattcgccaaggtcatctacctcatgtacggcaacttggaagaggagcggggcctc
gcgaggcacgctatgcgcatctacgaacgcgcaacgcgtgcggtggcggatgaggatcgg
gcagacatgttcaacttctacatcaccaagtcagcgtctaactttggcctgccatcgacg
aggccaatctacgaaaaggcggtttccactctacccgacaacgaagcacgggatatgtgc
ctaaagtttgccgacatggagaagcgccttggcgagatcgatcgggcgagagccatttac
ggtcacgcgtcacagttctgtgatccacgcaccagtccagctttttggaccaagtgggag
tcattcgaggtgcagcatggcaacgaggatacgttcaaggaaatgctccgtatcaagcga
agtgtgcaggcgcagtacaacacggacgtcaatttcatcgcgtcgcaagcgcttgcgcgt
agtcagcggagaccggaggactcgggcgatgccgaggtggacgatgccatggcggcactt
gagcgacaagcaagagcaccagccgggttcgtggctgccagcgacgctaccaagatgagc
agcacattggaagcaccgccagcaccggcgaatccggacgctatcgacattgacgacctt
gacgagtaa
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