Colletotrichum lupini: CLUP02_17463
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Entry
CLUP02_17463 CDS
T08561
Name
(RefSeq) RNase3 domain-containing protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_17463
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CLUP02_17463
microRNA pathway
RISC loading complex
CLUP02_17463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DSRM_2
ResIII
Helicase_C
DEAD
Flavi_DEAD
ERCC3_RAD25_C
MUCL1
Motif
Other DBs
NCBI-GeneID:
73351383
NCBI-ProteinID:
XP_049137597
LinkDB
All DBs
Position
10:complement(join(886202..887854,887902..890415,890473..891126))
Genome browser
AA seq
1606 aa
AA seq
DB search
METSKRQRIGDWPLIDGLGELYLTPLPSKPSTPVERSHKPPSTTGLGGTCPAIEFSTKLP
SPSCSTATSSRHDSVVNTDDVEEQDQADEDEEDDYRRWSVNPERPRKISEKKRQDHAKFQ
SWIESNQAKVLEAASKTKAPTHGSVAYLLKESENRRIIQSPREYQIELFERAKQKNIIAV
LDTGTGKTLIAALLLRHILEKEVEDRAHGKPKRTAFFLVDKVSLVFQQHAVLECNLEHSV
ARYCGDMVDEMWSSEFWAKQFEENMVVVCTAAILQKCLMHSYICMHQINLLIFDEAHHTK
KNHPYARIIKDFYIREPEKEKRPKILGMTASPVDAQTNMKVATAQLECLLHSEIATVSEE
SLALNPNQRKITEREIHYTPLVRSFESELVQKIRALVRRNQLFDKELQWTTTAMAELGPW
VADRFWKLYLTDNTIARLANRTDINYSGFDGNGKQTAAVQKLRDIIQSHNFKPPALSLDD
VSSKVLRLWDELKVRFSQPTDHRCIVFVEMRLTAVMLAELFKQDGMDLPHLKSAALVGSQ
ASAGLGNMSFKEQLLTITKFRRGEVNCIFSTQVAEEGIDIPACNVVMRFDLYKSVIQYIQ
SKGRARQQDSEYLSLVEIGNGRHTRAVAQATYDQSVLRRFCSALPEDKKIMGMDINASVM
QAELHYQTYTIKETGAKLTWMSSLEVLANFASSLRQSSDEVLMPEYVVTNQGQSFIAEVQ
LPAKSPILSMTGMPHKRKQAARCSAAFELCKELVKKKYIDLNLQPIFTKKLPAMRNARLA
ISSNKRAEYRMRTKPEIWSRVGVFDHLYVTVLALGSPDAVGKESKPLLLLTREKLPDLPP
IPLFFGNDQKSNTFIVSLPKPINMSPANSELLKKFTLRVFKDVFSKEYEAAVFDMPYFLA
PTAQSHSADYQHADAATLVDWNHLQATNDKDYLDWDDSTSDEFFTDKLVIDPYAGSRKLR
LRGVRKDLKPMDPVPDGVPDPGHRPWRDSAVEKNIKEYSVSLWMKSRLKRTWRDTQPVVE
AEVISLRRNLLDDFVEATNGESKVCYVILEPLRVSTLPMETVVMAFTFPAIIHRMDQVLI
ALDLCKLLKLDIRPDLALEAVTKDSDNSDEHDAEKINFQGGMGNNYERLEFIGDTCLKMA
TTIALFTNNPDNNEFQYHVERMLLISNRNLLNKAIDRNLQEYVRSKSFNRRSWYPQGLRL
IRGKEGTVDVNHALADKSIADVCEALIGAAYLTFSDSNDFDMAIQAVSAMVNDKNHRMTS
WADYYAGYKPPSWQTEPASAMYRDVARQVKNKMGYDFKSPALLRSAFKHPSCPHNVCSLP
NYQRLEFLGDALLDMVCVDFLYHKFPSADPEWLTRHKSTMVSNRFLACLCVKLDLHKHIL
TAQASLLSQTQEFVAALRFAEESAREEALMEAVQNGAPADGEQGKEAPVTKATGNATTAA
PVSYWQHVEDAPKYLSDMMEAYIGAVFVDSDYDFGQVRAFFEAHVRPFFTDMSLYSDYAL
NHPVTNVSHMLSNDFGCDGWRLMTNEVVPPVEAGAGVITETQVLCGIMIHGQVYFHATAA
SGRYAKVAVAKVAIMKFTDMDREAFRKEFGCDCQDAEGECGTQLVS
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atggagacatctaaacgtcaaagaatcggggattggcctctcatcgacggcctaggggag
ctctacttgactccccttccctcgaagccctcgacgcctgtggagagaagccataaaccg
ccttcgacgaccggactaggaggaacctgcccggcaatagagttttccaccaagctaccc
tctccgagctgttcaaccgcgacttcctccaggcatgattccgttgtcaacacagacgac
gtcgaagagcaggatcaggcagatgaggatgaagaagatgactatcgtcgctggagtgtc
aaccctgagaggccgcgaaagatctcagagaagaagcgtcaggaccacgccaagttccag
tcttggatcgaatcgaatcaagccaaggtgcttgaggcagcctcaaagaccaaggcaccg
acgcatggttctgttgcatacttgttgaaggaaagtgagaaccgaagaattattcagagt
cctcgcgagtaccagatcgagctcttcgaaagagcgaaacagaaaaacatcatcgcagtc
ctggacacgggcaccggcaagaccttgattgccgctcttctgcttcgtcacatacttgag
aaggaggtcgaggaccgcgcacacggaaagcctaaacgtacggctttctttctggttgac
aaggtgtcgctggtctttcagcagcacgcggttctcgagtgcaacctggagcattctgtc
gcccggtactgcggtgacatggttgacgagatgtggtcaagcgagttctgggctaaacag
tttgaagagaacatggtcgtggtttgtactgcggccattttgcagaaatgtttgatgcac
tcttacatttgcatgcaccagatcaacctcctcatcttcgacgaagcacatcatacgaag
aaaaaccatccctacgcgcgcatcatcaaggatttctacatcagagagcccgaaaaggag
aagagacccaaaattctcggcatgactgcgtcaccggttgacgcccagacgaacatgaag
gttgccactgctcaactagagtgcctcctacacagcgaaattgcaaccgtctccgaggaa
tcgctggctttgaatcccaaccagcggaagattacagagagggaaatccactatacgcct
ctagtgagatcgtttgaatcggaactcgtgcagaagatacgggcacttgttcgcaggaac
cagctctttgacaaggagctccaatggactaccaccgccatggcggaactcggtccgtgg
gtagcagatcgcttctggaagctttaccttaccgacaacacgattgcacgactggcgaac
agaacagatatcaactactcaggtttcgacggtaatggcaagcagacagcagcagtccaa
aagcttcgggatatcatccaaagtcacaactttaagccacccgcactgtctttggatgat
gtgtccagcaaggtcctccgcctttgggacgagctgaaggtccgattttctcagccaact
gatcatcggtgcatcgtatttgtggaaatgagactcactgcagtgatgctcgccgagttg
ttcaagcaggacggcatggacttaccacacctcaagtcggcagcactcgtcggcagtcag
gcctctgcaggtctcggcaacatgtctttcaaggaacagcttttgaccatcacaaagttc
aggcggggtgaagtcaattgcatcttttctacccaagttgctgaagagggaatagatatt
cctgcctgcaatgtggttatgcgatttgacctttataagtccgtcattcagtacattcag
tcgaagggacgcgcaagacaacaagattcagaatacctttccctcgtcgagataggcaat
ggaagacatactcgagcggtagcgcaagccacgtatgatcaaagcgttctccgccgattt
tgcagtgcgttaccggaggacaagaagatcatgggcatggacatcaatgccagcgtgatg
caagcagagttgcactaccagacttacaccatcaaggagaccggcgccaagctgacgtgg
atgtctagcctagaggtgttggccaacttcgcatcatcactgcgccagtccagcgatgaa
gtcttgatgccagagtatgtggtgaccaaccagggacaatccttcatcgccgaggttcag
ttaccggcaaagtccccgattcttagcatgacgggaatgccacacaagaggaagcaggct
gcccgctgttctgcggcattcgagctgtgcaaggagctagtcaagaagaagtacatcgat
ctcaacttacaaccaatcttcaccaagaagctacctgcgatgcgaaacgcccgtctagca
atcagttccaacaaaagggcagagtacaggatgcgtaccaagcctgaaatatggtcacga
gttggtgtttttgatcatctgtacgtcacagtactggcacttggttcgccagacgcagtt
ggcaaagagtcgaagccgctgcttctcctcaccagagagaagttgcccgaccttcctcct
ataccactgttctttggaaacgatcagaagtctaatactttcatcgtgtccctgccgaag
ccgatcaatatgtctcccgcaaattcagagcttctgaagaagttcacccttcgtgttttc
aaggacgttttcagcaaggaatacgaagctgcggtcttcgatatgccttacttcctcgct
ccgaccgcacagagtcattccgccgactatcaacatgccgacgcagctacactagttgac
tggaaccaccttcaagcgaccaacgacaaagactatctagactgggacgacagcacctca
gatgagttttttactgacaagctcgtaatcgatccttacgcgggatctcgcaagctacgc
ttgaggggagttcgcaaagacctgaagccaatggatcccgtgcccgatggcgttcctgac
cctggccacaggccgtggcgcgactcagcagtggagaagaacatcaaggagtacagcgtc
agtctctggatgaaaagtcgtcttaagcgaacatggcgcgatacgcagcctgtggtcgag
gccgaagtgatctcactgagacgcaacttgctggatgacttcgtggaggccacaaatgga
gagtccaaggtctgctacgtgatattggagcccttgagggtctcgactttacctatggag
acagtcgtcatggcattcacatttcctgccatcattcatcgcatggaccaggtcttgatt
gccctcgacttgtgcaagttgctcaagctcgacatccggcctgacctggccctcgaagcc
gtcaccaaagactctgacaacagtgacgagcatgacgcagagaaaatcaacttccaaggg
gggatgggcaacaattacgagcgcctggagttcattggcgatacttgcttgaaaatggcc
accactatcgccctctttaccaacaatccagacaacaatgagttccagtatcatgtcgag
cgtatgctgttgatcagcaatcggaacctcttgaacaaggctatcgaccggaacttacag
gaatacgtgcgatcaaaatccttcaaccgccgcagctggtatcctcagggtctccgtctc
atccgaggcaaggagggcactgttgatgtcaaccatgctcttgcggacaaatccatcgct
gatgtctgcgaagccctgatcggcgccgcgtatctcacgttcagcgattcgaacgacttc
gacatggccatccaggcagtcagcgccatggtgaacgataagaaccatcgcatgacctca
tgggcagactactacgcagggtataagcctccctcttggcagacagagccagcctccgca
atgtaccgggatgtggccagacaggtcaagaacaagatgggatacgacttcaagtcacct
gcgctgctgcgaagtgcctttaagcatccgtcgtgccctcataatgtatgctctctgccc
aactaccagcgtctcgagttcctcggcgatgctctgctcgacatggtctgcgtagacttc
ctctaccacaagtttcccagcgcggatccggagtggctgacccgccacaagagtaccatg
gtcagcaatcgcttcttggcctgcctctgcgtgaagctggacctccataagcacattttg
acggcgcaggcatcgttgctgagccagactcaagaattcgttgccgctctcagattcgcc
gaagagagcgccagagaagaagctctaatggaagcagttcaaaacggagctcccgccgac
ggagaacaaggaaaagaagcgccggtgaccaaagctacagggaatgccacaaccgccgcc
ccggtgagctactggcaacacgtagaagacgcgcccaaatacctctccgatatgatggaa
gcgtacatcggcgccgtcttcgtggactcggactacgacttcggccaggtccgcgccttt
ttcgaagcccacgtccggcccttcttcaccgacatgtccctctacagcgactacgccctc
aaccatcccgtcaccaacgtctcgcacatgcttagcaacgatttcggctgcgacggctgg
cgcctcatgaccaacgaggtcgtgccgcccgtcgaggccggcgctggtgtcattaccgag
acgcaggtcctctgcggtatcatgatccacgggcaggtgtacttccacgccacggctgcg
agtggacggtacgccaaggtcgcggtcgccaaggtggctattatgaagtttacggatatg
gatagggaggcgtttagaaaggagtttgggtgtgattgccaggatgcggagggtgagtgt
ggcacacagctagttagttga
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integrated database retrieval system
