Colletotrichum lupini: CLUP02_17630
Help
Entry
CLUP02_17630 CDS
T08561
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
clup
Colletotrichum lupini
Pathway
clup03013
Nucleocytoplasmic transport
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_17630
09122 Translation
03013 Nucleocytoplasmic transport
CLUP02_17630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_17630
03041 Spliceosome [BR:
clup03041
]
CLUP02_17630
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CLUP02_17630
Spliceosome [BR:
clup03041
]
Complex C
Other components
EJC/TREX
CLUP02_17630
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CLUP02_17630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
73351548
NCBI-ProteinID:
XP_049137762
UniProt:
A0A9Q8WAF7
LinkDB
All DBs
Position
10:join(1410011..1414570,1414622..1414701,1414755..1417416)
Genome browser
AA seq
2433 aa
AA seq
DB search
MPPKRKARGGPAGEGGRPSPHRPGDMPLGQRERDFSEGGGRGGRGGRNTRRNDRRDSAQG
QPSQPGTQSASASRVTSPTVPRPPPTPSQPQHPAPIATGPPSAPISQPPSPVPTSYCYEH
LTDEAITSWETGSRQKLVTHGVDSRSDVDIEELAAIYQEFIHAVIEGRLSPVDAGACMKE
ILGSESQEMIKESFSFEPHTLFLDTLSIIFDNDRGLFRPQLRDFIQATGVSSELVRQTLD
AQLLQDLGMIRETFVKLGIRRATNLLYRQANYNLLREESEGYSKLMTELFTTSSSEPPSA
ETAHAAFERLKGLIGTFDLDVGRVLDVTLDVFAAVLIKQFRFFIKLLRVSSWWPSNQNPA
SSTYAGGLPPWALPDSSHWMTSQEVELESAEQKRQRDIEFWDRAREVHLDAFFQLGGRQV
TGDHLKLLEESESASEAEVNAASAWMKLTKTLPPQGNRTAAQLLGFKLRFYASDARDPDD
VLPANLLYLVALLVKVGFMSLVDIYPHLWPLDEEMEAMREKKMKELDEKERQSRPGAAQN
ALLMAGALPDDSAPPPTTRTRAVAGKADAESKADAAADEKEKLPEPMEQKAALLICLLTI
GAIPESLFILGRFPWLPEAYPEVLDRIHRILNYSVEKVYQESRPTPARSVEPASKPIADI
DQSGVPKGSVKLSTLPAKKSMRWPFPDGFDGRDQHYRFYWDEWADNVPVCQTVEDIFTLC
DTFLNLSGVSIGKDPALLAKFVSIGAKSLAEDRSQHNMDRWQDLLRRILVPALSMTNANA
AIVNSVWDLLKLYPVTTRYSIYAEWFEGQISRLPAMKAAFTRTRVETRGVMKRISLTNLS
EMAKSLAKTSYSSPGIVFREALGQIEAYANLIEAFVECAKYFTDLAYDVLIWSLVSSMGG
KRSRTQESSILLTSKWLQALSKFAGKVFKRYSILDSTPILQYVNDQLFQGNSTDLIILKE
LVSSMGGVVQVLDFTDDQILAMSGGEVLRRQTLLSLQDKRFESTRSAKRLMQSLVDSKLA
GRLLINVAQYRQAAIYKLPDDEAHIKYIGSVIDDSHQILVQYLDLLRTNLEPHEFEALVP
AITILMDEFGLDASLAFLIGREGVAYNMFTKKQDSTVNIDSDGDLSMAQDATEAKEATEE
PSEAEEKKPTPAEVREKAKKDAGRQIHEALDPIVTSMKSITPGTSWTKLSPEFYVLFWAL
QLGDIEVPAASYNNAHKRLSNLKKELDRDRSDMSRSGINKKEAKKAELLKISNELPKEAD
LQMKRARVVRDYMTDHMETWFTGSAEKLNGLSDAILEQCLLPRLVLSASDAEYCYVFIKK
LHMLGAPKFRLKALYDRLFCVNRLRAMIFTCTVREAEHLGRFLNCILKDLARWHRDTNAY
DREAVGKRSFFLGFATEFDDKGQPSSYYDHAQFRDILYGWHSKLNLALKSCLAGMEWMHI
RNAMTILKAVLDHFPAITFMGTQFIDQLKTITDREAASKTASAGEEGHRVDLSVAAQGAL
SELQRRKDKWIIPAGFRPNMNGGKAKDESTSTSLRPTATEFQPRSARTAAEQEDGEVKDG
EVKDSKDAGSRSAAPSAPATLTQKDPNLPPKPSASQPDTAKGGFPRGDIGSATSSKPPTP
KPANATPLPNNMNHRDVPRSTPTPTGSDRSAHNLPKRPDVPIPGHFGRTHFTPDALPDRV
REPRDAREPRGPRDTRESRDTRDHRDPREPSREPRFAEPSRPDRSRDFSGQDRRGPDAPP
REPGRLSEKDWPSRPDSLPPRRDHGPHEREGRPSRDRVPPTNGRVSESGRLSREPAVATP
PSQPTQKPAEDPPVNPARLALIQGDQPGRSNRSDRPSRSSETDRRSGRGPRTQETQSHEQ
RTLDQRAPEPDRTELINPERAALIGEPQTEAPARPTRDEPRDRNSQRGHSPRRNGRFNPE
APAEPARDDRHGRSHHSDHRSSGRETHAEPPAYNPRTERIGDRDGDRSGQDKGRDAFLGP
GRNSEPDHSRTAHQDQNYGRLNPIQSVLAPNEVPLGPRGRGRAAARGGSAGTPNSRSDGR
FPNADSPAAPEERHPPTGPASGRGRRNQYESNPPVNSPSAMTPTPAAHPDRARAINSGPA
GSPTPASGGPTLAPGIHPDRLAQIAPPPPPPPGQPPSHGHSRPPLPPINTPDRPSGGQGN
NNRTPTGNFPAPTDGVPSGPSSNDRGRSGGSRRQLAGINSTLQQAQANMPETNRGTSIRG
RGVARGSIAGSDAQVLTGASPVSTPVQERPNPVGQERAQANGEDHSQTEHDRSRREHRSE
RGRHSRRSSRERERSPGREREGKEPREHRERRSGAQNQSSTGRDERESRRSGREPSGSTR
ESHANPTHGSNRENTGSSRETRHRTDRGDGGRGDAATGPRNEEWAGNPRSAPRGGPREGG
LRPNDDRREDRGRKRRSEDAAGFPNDREKRQRR
NT seq
7302 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctaaacgcaaggctcgtggtggccctgcaggcgaaggcggcagaccctcgccc
catcgacccggagacatgccgctgggccagcgcgaacgagatttttcagagggcggaggc
agaggcggccgcggtggcagaaacactagaagaaacgatcgccgggattccgcccaggga
caaccatcacagcctggtacccagtcggcaagcgcttcccgcgtcacgtccccgactgtc
cctcgcccgccccctaccccatcgcagccgcaacatcctgcaccgattgcaacaggaccg
ccttcggcaccaatttcgcaaccgccctccccagtaccgacaagctactgctatgagcat
ctcaccgacgaggcgattacctcatgggaaaccggcagcaggcaaaagctagtcacccat
ggagtcgactcacggtcggatgtggacattgaggaactggccgccatctatcaagagttt
atccatgccgttattgaggggcggctatcacctgttgacgctggcgcttgcatgaaagag
atcctcggctcggaatcgcaggaaatgattaaggagtctttctcgttcgagcctcacact
ctctttctcgatactttgtccataatcttcgataatgatcgtggtctattcagacctcag
ctccgcgacttcattcaagcaacaggcgtctcgtccgagcttgtgcgccaaactctagat
gctcagcttcttcaagatttgggcatgatccgcgagaccttcgtcaagcttggtatcagg
cgtgcgacgaatcttctttaccgacaagcaaactacaatctactccgcgaggagagcgaa
ggttactccaagctcatgactgagctcttcacaactagtagctcggagcccccgtctgcc
gaaacggcacatgcagcttttgaacgtctcaagggccttattggaactttcgatcttgat
gttggaagagtcctcgacgttacactcgacgtctttgcagcagtcctcatcaagcagttc
cgattcttcatcaaacttctcagagtcagctcttggtggccgagcaatcagaaccctgct
tcgtcaacatacgcaggtggcctacctccctgggctctgcccgactcgtcacactggatg
actagccaagaagtcgaacttgagagtgccgagcaaaagcgccaacgcgatatcgagttc
tgggaccgcgctcgtgaggttcacctcgatgcattcttccagcttggaggaagacaagtc
acaggcgaccacctcaagttgcttgaagaatcagagtctgcatccgaggccgaagtcaat
gctgcatcggcatggatgaagctgacgaagaccctcccgcctcagggaaaccgaaccgct
gcccagctgcttggtttcaagctacgattttacgcctccgatgccagagatcccgatgac
gtcctgccagctaatctgctttaccttgtcgcacttctcgtcaaggttggcttcatgtca
ctggtcgacatctacccacatctctggcctcttgacgaggagatggaagccatgagagaa
aagaagatgaaggagctagacgaaaaggagaggcagagccgacctggcgccgcacaaaac
gccctacttatggcgggtgccttgcctgacgacagcgcaccgccccccacgactcgtact
cgagccgttgcaggaaaagcagatgcggagtccaaggcagacgctgctgcagacgaaaaa
gaaaagctaccagagcccatggagcagaaggctgcgttactcatctgccttttgaccatt
ggcgccattcctgaatctcttttcattcttggccgcttcccttggctaccagaagcctat
cctgaagttctggacaggattcatcgcattctcaactacagtgtggagaaggtctaccaa
gaaagtcggccaactcccgcccgctcggttgagcccgcctccaaaccaattgccgacatt
gatcagagcggtgtacccaagggttccgtcaagctatccactttaccagccaagaagtct
atgagatggccattccccgacggattcgacggcagagatcagcattacagattttactgg
gacgaatgggcagacaacgtcccagtgtgtcagactgtcgaagacatcttcacattatgc
gacacgttcctgaatctttccggcgtaagcatcggcaaagatcctgcattactggccaag
tttgtcagcatcggtgcgaagagtttggcggaagaccgctcccagcacaacatggaccgg
tggcaggacctcttgcggcgcattctggttcctgctctcagcatgaccaacgccaatgcg
gctattgtcaactccgtctgggacctgctcaagctttaccctgtcacaacccgatactcc
atctacgccgagtggtttgaaggccagatttcccgactgccggcaatgaaggcagccttc
actcgcactcgcgtggagaccagaggtgtgatgaagcgcatttctctcacgaatctcagc
gagatggccaagtcgctagccaagaccagctattcgtcgccaggcattgtgttcagggag
gctctgggccagatcgaggcttacgcaaatctcatcgaagcatttgttgagtgcgccaag
tacttcactgatctggcctacgatgtcctgatctggtctctcgtgagctccatgggtgga
aagcgaagccgtactcaggaatcttccatcttgctgaccagcaaatggcttcaagctctt
tccaagttcgccggcaaagtcttcaagcggtactccattctagactcgacacctattctt
caatacgtgaatgatcaactcttccagggcaactcgaccgacttgattattctcaaagag
ctcgtgtcctcaatgggaggtgttgtgcaagttcttgactttaccgacgatcaaatcttg
gccatgtctggaggagaggtactgcgacgccagacactgctcagcctccaagacaagcgg
tttgagtcgactcgcagcgccaagcgcctcatgcagtctctcgtcgactcgaaactcgct
ggacgtctgcttatcaacgttgctcaataccgacaagctgccatctacaagcttcccgac
gatgaggcgcacatcaagtacatcggctcggtcatcgatgacagccatcagattctggtt
cagtatctcgatcttctacgaaccaaccttgagcctcatgagttcgaggcattggtgcct
gcaatcactatcctcatggacgaatttggacttgacgcaagcctggcgttcctcatcggt
cgtgagggtgtcgcatacaacatgttcaccaaaaagcaagactccacagtcaacatcgac
tccgacggagacttgtcaatggcccaagacgcaaccgaagcaaaggaagccactgaggag
ccgtctgaggcggaggagaagaagccgacgccggcagaggttcgggagaaggcaaagaag
gacgccggacgccagatacacgaggcgctcgatcccatcgttacgtcaatgaagtccata
actccaggtacttcatggaccaagctcagcccagagttctatgtcctcttctgggctcta
cagctcggtgacatcgaggtcccagctgccagttacaacaacgctcacaagcgactctcg
aacctgaagaaagagctcgacagagatcgctccgacatgagtcgcagcggtatcaacaag
aaggaagccaagaaggctgagctgctcaagatcagtaacgaactgccgaaggaagcggat
ctccagatgaagcgagcgcgagtcgtacgagattatatgacggatcacatggaaacctgg
ttcacgggttcagcggagaagttgaatggtctgtctgatgcgatcctcgagcaatgctta
cttccccggctggtgctctccgctagcgacgctgagtactgctacgtgtttatcaagaag
ctccacatgcttggcgcacccaaattccgtctgaaggcattgtatgatcggctattctgc
gtcaataggctgcgggccatgatcttcacttgcacagtccgcgaggcagagcacctgggc
aggttcctcaactgcatcctcaaagacttggctaggtggcatcgtgacacgaacgcttac
gacagagaagcggtcggcaagcgcagcttcttccttgggtttgctaccgagttcgatgac
aagggacagccatcatcttattatgatcatgcgcaattccgtgacatcttgtacggctgg
cacagcaagctcaatttggcattgaagtcgtgccttgccggcatggaatggatgcacatc
cgtaacgccatgacgattcttaaggcggttctcgatcacttcccagcaatcaccttcatg
ggcacacagtttatcgatcaactaaagacaatcacagatcgtgaggcagcttcgaagact
gcgtctgctggcgaggagggacaccgcgtggacctgtcagtcgcggcgcagggtgctttg
tcggaattacagaggagaaaagacaaatggattatacccgccggcttccgcccgaacatg
aatggcggaaaggccaaggacgagtcgacctcaaccagtttgcgcccgaccgcgactgaa
ttccagcctcgatcagccaggaccgcggcagagcaggaagacggcgaagtcaaggacggc
gaggtcaaagacagcaaagatgctggatcccgatcagcagcaccctcggcaccagctacg
cttactcaaaaggatcccaacttgcctcccaagccctcggcctcccagccggacacagca
aagggaggcttcccgcgtggcgacatcgggtccgccacttcgagcaagccgccaacacca
aagccggcgaatgcaacgcccttgccgaacaatatgaaccaccgggatgtgcctagatcg
actcctacacctacgggatcagacagaagtgcgcacaacctgcccaagcgaccagacgtc
cctatccctggccatttcggtcgtactcatttcactcctgacgctttgccagaccgggtc
cgagaaccgagagatgcacgagaacctcgcggtcctagggatacaagagagtctcgagat
accagagatcacagggacccacgcgagccctcaagagaacccagattcgccgagccatcg
cggcccgaccgcagtcgagacttttctggacaagacaggagaggaccagatgctccacct
agagaacctggtcgcctttccgagaaagattggccctcgagaccagactcgctgccccct
cgccgcgatcacgggccccatgagcgcgaaggtcgtccctcccgagatagagtgcctcca
acaaatggacgtgtgtctgaatcgggcagactgtctagagaacctgctgtcgccaccccg
ccatctcaacctacgcagaagccagcggaggatcctcctgtcaaccctgctcgcctggcc
ttgatccaaggagaccaacctggtaggtctaaccgctcagaccgcccgtctcgatcatca
gagacagaccggcggagtggccggggaccgcgcactcaggagactcagagccacgagcag
cggactcttgaccagcgtgctccggagcctgaccgtactgaattgatcaaccctgagcgt
gctgccctgatcggtgagccacaaaccgaagcgccagccaggccgacaagggatgagccc
agagaccgaaattctcaacgaggtcattcgccgcggagaaacgggcgattcaatccagaa
gcaccagcagagcctgcgagggatgacagacacggccgctcccatcactcggatcatcga
tcctctggaagagagacgcatgcggagcctcctgcctataaccccagaacagaacgtata
ggcgacagggacggtgaccgttctggccaagacaagggtagagacgcattcctgggtcct
ggtcgaaactctgaacctgaccacagccgcactgctcaccaggaccaaaactacggtcgt
ctgaacccaatccagtcggtacttgccccgaacgaggttccactaggaccccgtggtcgt
ggtcgagcggctgcccgaggtggatccgcgggcacccccaactcacgatctgatggtcgt
ttcccgaatgcagacagcccggcggcgcccgaagaacggcatccacccacaggtccggcc
tcaggcagaggacgtcgtaatcagtacgagtctaatccgcccgtcaactctccgtctgct
atgacgccgaccccagcagcacaccccgatcgcgcacgtgctatcaactcgggcccggca
ggctcaccaactccagcctcgggaggacctaccttggctcctggtattcatcctgatcga
ctggcacagattgcaccaccaccgcctccgcctcctgggcagccacctagtcacggtcac
tctcggccgccactgccccctatcaacacaccagaccgcccgtcaggaggccaaggtaac
aacaaccgaacaccgacaggcaatttcccagctcctaccgatggggtaccatcaggaccg
tcatcgaatgatcgaggtcgcagcggcggcagtcgtagacagcttgcgggtatcaatagc
actttgcagcaagcacaggccaacatgcctgagaccaacagaggcacaagtatccgcggg
cgtggggttgccagaggtagtatcgctggctccgatgctcaagttctgacaggtgcatca
ccggtgtctacgccagtccaagaacgtccgaaccctgtgggacaagaaagggctcaggca
aacggtgaggatcattcacaaaccgaacacgatcgcagccgtcgcgagcatcgttcagag
cgtggtcggcactcaaggcgcagcagtcgtgaacgagaacgcagtcctggtcgcgaaagg
gagggcaaggagccccgtgagcacagggagagaaggtccggagctcaaaaccagtcatcc
actggtcgagacgaacgtgaatcccggcgttctggtcgagagccgtccggcagcactagg
gagtcgcatgcgaaccctacccacggcagtaaccgggagaacacaggaagcagtcgcgaa
actcgccatcggaccgatcgcggagatggcggacgtggagatgcagcgacggggccaagg
aacgaagaatgggctgggaatccgcggagcgcgcccagaggaggacctcgcgagggaggt
ctacgaccgaacgatgaccgacgcgaagatcggggccgaaagcgtcgaagcgaagatgca
gcaggctttcccaacgaccgagaaaagaggcagagacgctag
DBGET
integrated database retrieval system
