Colletotrichum lupini: CLUP02_17897
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Entry
CLUP02_17897 CDS
T08561
Name
(RefSeq) pre-mRNA cleavage complex II protein Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
clup
Colletotrichum lupini
Pathway
clup03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CLUP02_17897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_17897
Enzymes [BR:
clup01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
CLUP02_17897
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CLUP02_17897
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
BSH_RND
MMR_HSR1
AAA_16
AAA_24
FeoB_N
nSTAND3
AAA_35
AAA_28
Motif
Other DBs
NCBI-GeneID:
73351811
NCBI-ProteinID:
XP_049138025
LinkDB
All DBs
Position
10:complement(join(2454247..2454518,2454603..2454869,2454928..2455723,2455811..2455846))
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AA seq
456 aa
AA seq
DB search
MSIPGLGHLVAPQSTSANQTRTIRLQPFWEWRFQVAFDTQITLKLLSGTAEKDGTELALQ
HIYTFAGTRSKILTLQGCELEVEGVLAEESVAEYAKPQDSPANSVLNLHFQLTAMRQRAA
AERREGPRIAVCGPPTTGKTSLTRTLTSYAARVGAQPLVVNTDPKEGMLSLPGTLSASVV
GSLLDVEAVDGWGTTPTSGPSQVPVKLPLVYYYGHASSEEDPAKYKELVSKMAATVTSRL
GQDPEVKGSGMIIDTQAVTETNQVGMENFVHVVEELSVNIIIVLGSPSLNAEVTKRFSTE
RTSLGENYSILLLEKSDGVVERDVGYTQQACEASIKEYFFGSIGQTLSPATQQVDFDSLA
IYKLGDYSMYGGGADESLMRVDPAQVMAHWTLAIVYASVKDSPETIRTANVMGYVYIADI
DKEKRKLRILAPVSGRLGDRPLLMGKWPEPFINLLG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccccggcttgggccaccttgtggcgccacaatcgacgtccgcgaaccaaacc
cgcacaatccgcctccagcccttctgggaatggcgcttccaagtcgccttcgacacccaa
atcaccctcaaactcctctccggcaccgccgaaaaagacggcaccgagctcgcactccag
cacatctacacctttgccggcaccagatccaagatcctcaccctgcagggatgcgagctc
gaggtcgagggcgtgctggcggaagagtccgtcgcagagtacgccaaaccacaagactcc
cccgccaactcggtcctgaacctgcacttccagctcaccgccatgcgccagcgcgccgcc
gccgagaggagggaagggccaaggatcgccgtctgcgggccgccgacgacggggaagacg
agcctgacgaggacgctgacgagttatgctgcgcgggtgggcgcgcagccgttggtggtg
aacacggatcccaaggaggggatgctgagcttgccggggacgttgagcgccagcgtcgtc
gggtcgttgttggatgtcgaggctgttgacgggtggggtacgacgccgacgagcgggccg
agccaggtgccggtcaagctgccgctggtgtactactacggccacgcgagctctgaggag
gacccggccaagtacaaggagctcgtgagtaagatggcggcgacggtgacgtcgaggctg
gggcaggatcccgaggtcaaggggtctggcatgataattgacacgcaggccgtgacggag
accaaccaggttggcatggagaactttgtgcatgtcgtggaggagctctcagtcaacatc
attattgtgttgggctcaccaagtctcaacgccgaagtcactaagcgcttctcaacggaa
aggactagcctcggcgagaattacagcatcctcctcttggaaaagtcagacggcgtggtt
gagcgcgacgtgggctacacacagcaggcctgcgaggcgtccattaaggaatacttcttc
ggtagcatcggccagacgctgagtcccgccacgcagcaggtcgactttgatagcctggcg
atatacaaactaggagattactccatgtacggcggtggcgccgacgagagcctgatgcgc
gtggaccccgcacaggtcatggcccattggacgctggcgatcgtctatgcctcagtcaaa
gactcaccggagacgatacggacggccaacgtgatggggtacgtgtacattgccgatatc
gacaaggagaagcgcaagctgaggatcctggcgccggtaagtggtcggttgggagatagg
ccgctgttgatgggcaagtggccggagccgtttatcaacctgttgggatag
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