Colletotrichum lupini: CLUP02_17901
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Entry
CLUP02_17901 CDS
T08561
Name
(RefSeq) helicase associated domain-containing protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
clup
Colletotrichum lupini
Pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_17901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clup03041
]
CLUP02_17901
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLUP02_17901
Spliceosome [BR:
clup03041
]
Complex C
Other components
Step II factors
CLUP02_17901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
AAA_22
WHD_HA2
DEAD
AAA_19
AAA_30
nSTAND_NTPase5
T2SSE
nSTAND3
AAA_16
PhoH
Cas3-like_C_2
NB-ARC
Motif
Other DBs
NCBI-GeneID:
73351815
NCBI-ProteinID:
XP_049138029
UniProt:
A0A9Q8WA84
LinkDB
All DBs
Position
10:join(2464860..2464890,2464944..2465011,2465075..2468734)
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AA seq
1252 aa
AA seq
DB search
MDNQLKVVMRIRTATSGWGEVGTGSAFSDTSLSRPSHLEVLFSPTGHLLSATMDDLLNLE
LLSLVSKVTSELQNHLGVSDKTLAEFIIAQRVEAEDYDGFKKKLAGMGADFPPSLVESVD
RLVLTMHPKMKGKAKKNSNGAGSSDEHHHRSAAEKDEIFRGLSVPDKPVAYDSIGDGVDA
IDDTLALLEGLEGKARKDKPDSRKRSRSPDDGRDSRRKRRGRSRSRERRKRDKYRSRSRS
HDDYESGPSLKQRSRRRNYDDEDDGRFRRAPEPEVDDAPQLHKVYSGHVTGIKDFGAFVN
LHGVRGKVDGLVHISRLVEGQRVNHPSDLLEKGQDVKVKVVNIEGNRIGLSMKEVDQETG
MDLYPEDRISSGANMQALGGGGGGRNGNMFDDGPMPPPQHQPRRQKKRMTSPERWEIRQL
IASGVAKASDYPDLEEDYNATLTGDGELELEQDVDIEVREEEPPFLAGQTKQSLELSPIR
VVKAPDGSMNRAAMSGTALAKERKELKQQEAEAAAAEDSKVDLSAQWNDPMADPDKRKFA
SDLRNAKSQMAQSKPDAVPEWKRAVAPKDQTFGKRTNMSIKDQRESLPVFAFRRKFLDAV
REHQVMVVIGETGSGKTTQLTQYLAEDGFANDGVIGCTQPRRVAAMSVAKRVAEEVGTPL
GEAVGYTIRFEDKTSPATKIKYMTDGMLQREILVDPDLRRYSVIMLDEAHERTISTDVLF
ALLKKTMKRRKDLKVIATSATLDADKFSSYFDGCPIFTIPGRTFPVEVLYSREPESDYLD
AALVTVMQIHLTEPPGDILLFLTGQEEIDTSAEILYERMKALGPNVPELIILPVYSALPN
EMQSRIFDPAPPGCRKVVIATNIAETSITIDNIYFVVDPGFVKQNAYDPKLGMDSLVVTP
ISQAQANQRAGRAGRTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHVILMLKAMGIN
DLLHFDFMDPPPINTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPSLAKVLIISVD
MKCSAEMLIIVAMLNLPNVFYRPKEKQSQADQKKAKFHDPHGDHLTLLNVYNSWKQSSYS
SPWCFENFIQARSMKRAKDVHDQLVKIMDRYRHPIVSCGRHTQIVRQALCSGFFRNAARK
DPQEGYKTLIEGTPVYLHPSSALFGKQAEWVIYHTLVLTTKEYMHCTTSIEPKWLVDAAP
TFFKVAPTDRLSKRKQAERIQPLHNKYAGEDDWRLSAQRKGGRGGGGGGTWG
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggacaatcaactgaaggtggtcatgcggatacgtactgctaccagtgggtggggcgag
gtcggaacgggaagtgctttctccgacacttccctgtcacgaccatcgcacttggaggtc
ctgttttcacccacaggtcacctactttccgccaccatggacgacctcttgaatcttgag
ctcttgtcgctcgtgtctaaggtgacctccgaactgcagaaccatttgggcgtttccgac
aagacgctcgccgagttcatcatcgcccagcgagtcgaagccgaagactacgatggcttc
aagaagaagctcgccggcatgggcgccgacttccccccgagtttagtcgagagcgtcgat
cgcctggtgctcactatgcacccaaagatgaagggcaaagcaaagaagaacagcaacggt
gccggcagcagcgatgaacaccaccatcgcagcgccgcagagaaggacgagatctttaga
ggcctctcggtgcccgacaagccggtggcgtacgacagcataggtgacggcgtcgacgcc
attgacgatacgctagcgcttttggaagggttggagggaaaggcgcggaaagataaacca
gactcgcgcaagcgaagccgcagcccagacgacgggcgcgactcacggcggaagcggagg
ggtcggtcgaggtcgagggagcggaggaagcgcgacaagtaccggtcgagatcacgatcg
cacgatgattacgagagcggaccttcgctgaagcagaggagtcggagacgcaactacgat
gacgaggacgatggccgctttaggagggcacccgagcccgaagtcgacgatgcgcctcag
ttgcacaaggtttatagtggacatgtcacgggtatcaaggatttcggcgcctttgtcaac
ctgcatggcgtacgtggcaaggtggatggtttggtacacatttcgaggctggtggaaggt
cagcgggtcaatcacccgtcagatctgttggaaaagggccaggacgtcaaagtcaaggtt
gtcaatattgaggggaacaggataggactgtcaatgaaggaggtggaccaagagacgggc
atggatctgtacccggaagacaggatatcctcgggcgcaaatatgcaagcgttgggtggc
ggcggcggcggccggaatggaaacatgtttgacgatgggccgatgccaccaccacagcat
cagcctcgccggcagaagaagcgcatgacgtccccggaaagatgggagatccgccagctg
atcgcgtccggtgtcgcgaaggcttccgattaccccgacctcgaagaagattataacgcg
acactgacaggcgatggagaattggagctggagcaggatgtcgatatcgaggttcgagag
gaggaaccgccattcctggccggtcagacgaagcaatcattggaactatcacccattcga
gtcgtcaaagcacccgatggctctatgaacagagctgccatgtcgggcactgcgttggca
aaggagcgaaaggagctaaagcaacaagaagcagaggctgccgcggcggaagactccaag
gtcgacctctctgcgcagtggaacgacccgatggcagatccagacaagcgcaagttcgcc
agcgatctacgaaacgccaagtcccagatggcccagagcaagcccgacgctgttccggaa
tggaagcgagctgtggcgccaaaggaccagacttttggcaagcggacgaacatgagcatc
aaggatcaacgagagtcgttgcctgtcttcgcctttaggcggaagttcttagacgctgtt
agggagcaccaagtcatggtggttatcggagagactggttcaggcaagacgacgcagctg
acgcaatatctcgccgaggatggcttcgccaacgacggagtcattggttgcacacagccc
agacgtgtagccgccatgtccgttgctaagcgtgtggccgaagaagttggcacaccgctg
ggcgaggctgtcggttacacgattcgtttcgaggacaagaccagtcctgcgacgaagatc
aagtatatgacggatggtatgcttcagcgtgaaatcctcgtcgatcccgatctgaggcgc
tactcagttatcatgctcgacgaggcccacgagcgtaccatttctacggatgtcttgttt
gcgcttctgaagaagacgatgaagcgtcggaaggatctcaaggtcattgccacatcggca
acgctcgacgccgacaagttctcttcgtatttcgacggctgtcccattttcacgattcct
ggtcgcacgttccccgtcgaggtgctgtactcacgcgagcccgaatctgactatctcgat
gctgcgctcgtcaccgtgatgcagattcaccttaccgaaccgcctggggatatcttgctt
ttcttgacgggtcaggaagaaatcgatacatccgctgagattctgtatgagcggatgaaa
gcattaggacccaacgtcccagagctcatcattttgcctgtgtactctgcactccccaat
gagatgcagagtcgtattttcgatcccgcacctcctggctgccgaaaggtggtcatcgcc
accaacattgccgaaacatccatcacaatcgataacatttacttcgtcgttgaccctggt
ttcgtcaaacagaacgcttacgatcccaagttgggcatggattcattggttgtcacgcca
atttcgcaagcccaggcgaatcaacgtgctggccgcgccggacgtacaggacctggaaag
tgtttccgcttgtacaccgaagcggcctaccagtccgagatgttgcctacaaccatcccc
gagatccagaggcagaacttgtcgcacgtcattctcatgctcaaagccatgggcatcaac
gacctgttgcattttgactttatggaccccccgccaattaacactatgcttacagcatta
gaagagctatatgcgctcagtgctctggatgacgagggcctgctgacgcgtctgggacga
aagatggcagactttcccatggaaccgtctctggccaaggtgctcatcatctccgttgac
atgaagtgctcagcagagatgctcatcatcgtcgccatgctcaacctccccaatgtcttt
taccgccccaaagagaagcaatcgcaagcagaccagaagaaggccaaattccacgacccg
cacggcgaccacctcacactgctgaacgtctacaactcatggaagcaaagtagttactcg
agcccctggtgtttcgagaacttcatccaggcgcgttcaatgaagcgtgccaaggacgtg
cacgaccagctcgttaagatcatggaccggtaccgacaccccatcgtcagttgcgggcgg
catacgcagattgtgcggcaggcgctctgctctggcttcttccgcaacgcggcgcgcaag
gatccgcaggaagggtacaagacgctcatcgaggggacgccggtgtacctccacccgagc
tcggcgctgtttgggaagcaggccgagtgggtcatttaccacacgctcgtgctgacgacc
aaggagtacatgcactgcacgacgagcatcgagccaaagtggctcgtggacgcggcgccc
acgttcttcaaggttgcgccgacggatcggttgtccaagaggaagcaggcggagaggatc
cagccgctgcataataagtatgctggggaggacgactggaggctgagtgcgcagagaaag
ggcggtcgtggaggtggtggtggcgggacgtggggttaa
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