Clavispora lusitaniae CBS 6936: A9F13_01g01562
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Entry
A9F13_01g01562 CDS
T05147
Name
(GenBank) putative 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03008
Ribosome biogenesis in eukaryotes
clus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
A9F13_01g01562
09123 Folding, sorting and degradation
03018 RNA degradation
A9F13_01g01562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clus03021
]
A9F13_01g01562
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_01g01562
03009 Ribosome biogenesis [BR:
clus03009
]
A9F13_01g01562
03016 Transfer RNA biogenesis [BR:
clus03016
]
A9F13_01g01562
Transcription machinery [BR:
clus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
A9F13_01g01562
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
A9F13_01g01562
Ribosome biogenesis [BR:
clus03009
]
Eukaryotic type
Pre-60S particles
RNases
A9F13_01g01562
Transfer RNA biogenesis [BR:
clus03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
A9F13_01g01562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-ProteinID:
OVF10743
UniProt:
A0AA91T3T4
LinkDB
All DBs
AA seq
1041 aa
AA seq
DB search
MGVPAFFRWISRKYPKIISPVVEDVGDPQFGRVPQYSDPNPNGELDNLYLDMNGIVHPCS
HPEHKPAPETEDEMFLDVFKYTERVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRAAQ
DARAAAEEKERQIREFEARGQAIDDAIKGKKSWDTNAITPGTPFMDGLALALRYWVAHKL
ASDPGWRDLQVIVSDATVPGEGEHKLMSFIRSQRADPQYDANTRHCIYGLDADLIFLGLA
THEPHFRVLREDVFAQGNGRMRVADQLQITQDQRDAIAEQDAKKPFLWLHVNVLREYLEV
ELRQRTRMQWDLERAIDDWVFMCFFVGNDFLPHFPSLSVRDNGIDILVGCWKQVIPRLRD
YITCDGKLNYEGVEQLLAVLATKEDEILRKRHESERRYANNEKRRKVGQAEEKAMRAQFL
PNVSKGRERAPVHADTNMPLMDTSGNLVEGYAQLSNKDIVHNRDVITKANMANEDAAAAL
RKLLEAKASGATGKSEETSDVSIKNEEESEVESQEPIDSIKGDDVDSVKSESMESLKTES
SDSIKQADSAEPPSRKRALDDVRYLEAGYRDRYYEAKFGASSPEEVADIRKKVVRAYLEG
ISWVLLYYYQGCPSWQWYFPYHYAPFAADFTNLREIVGEEGIKFDLGEPFNPYEQLMAVL
PAASGHTLPEVFRSLMSHPDSEIIDFYPETFQIDMNGAKMSWQGIALLPFIDEKRLLTAV
RAKYSLLTDDERERNTNKKAQLFISSGNANYKKFIQACEEDREISFGAHRTGLAGKIRPL
LSFSPDGETLFPLKEGEMPNVPNSAYFQAWYDFPESYPGKSMLLNGYIPHEKVLDESDKY
TVLGRSRPNYNFQNVSSYVNHGPCGEKDFLMYSMRRGGYRALLEMGRNANQTRNQGRSNH
SQGNGNYGGKHYGNNHHGNSNYGNNYGNQYGNYGNNQYGNQNYGNQNYGNNQYGNQYGNN
QYGNQNQYGNQYGNQNQYGNQYRNNYGNNQYGNNQYQGQYGHQNQSREDQYGSHSYSNHN
QNTHGRSNYQSNRGGRSGYRR
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttttcgatggatctcccgaaagtatcctaaaatcatttcgcct
gtggttgaagatgtgggtgatccgcaatttggacgtgtcccgcaatatctggacccaaat
ccaaatggtgagcttgacaatttatacttggacatgaacggtatagttcacccatgttcg
catcccgagcacaagccagccccagagacggaagatgaaatgtttttggatgtctttaaa
tatacagagcgtgttctcatgatggctcgtcctcgaaaggtattgatgatagctgtggac
ggagttgcgccccgggccaagatgaatcagcagcgggctcgtcgttttcgcgctgcacaa
gatgctcgggcagctgctgaggaaaaagagcgccagatccgtgagttcgaggcgcgtggc
caggctatagacgatgccatcaagggcaagaaaagttgggacaccaacgccatcacaccc
ggaacgccatttatggacggcttggcacttgcactccggtactgggtagcgcacaagctt
gcgctggaccctggctggcgtgatcttcaggtcattgtgagtgatgccaccgttcctgga
gaaggtgaacacaagctcatgagtttcattcggtcgcaacgtgcagatccacagtatgac
gctaatactcgtcactgtatttatggattggacgctgatcttattttcttagggcttgca
acgcatgaaccacactttcgagttttgagagaagatgttttcgcgcagggcaatgggcgc
atgcgagtagctgaccagctccaaataacacaggatcagcgagatgccattgcagaacaa
gatgcaaaaaagcccttcctatggcttcatgtcaatgttttgcgtgagtatttggaggtg
gagttgcgccaacgtacacggatgcagtgggacttggagcgcgccatcgacgactgggta
ttcatgtgttttttcgttggtaatgattttttgccccactttccctctttgagtgttcgg
gacaatggtattgatattttggttggatgctggaaacaagtaatcccccgtcttcgtgat
tacattacatgtgatggaaagttgaattacgaaggtgtcgagcagttgttggcagtttta
gctacaaaagaagatgagatacttcgcaagaggcacgagtccgaaagaagatatgccaac
aacgaaaagaggaggaaggtgggccaagctgaagagaaggctatgcgtgctcagttcttg
cctaatgtctctaaaggacgtgagcgtgcaccggtacacgcagacacgaatatgcctttg
atggatacgctgggaaatttggtagaagggtatgcgcagttgtccaacaaggatatcgtg
cacaaccgtgatgtcattaccaaagcaaacatggcgaacgaggatgcagctgcggcgctc
cgcaagttgctagaggcgaaggcaagtggcgcgactgggaaatcagaagaaaccagtgac
gtcagcattaagaacgaagaggagctggaagtcgagctgcaagaaccgattgactccatt
aaaggtgacgatgtggattctgttaaaagtgaatccatggaatcccttaaaacggagtct
tcagactctattaagcaggcagactccgcagaaccaccatctcgcaaacgtgccctagat
gacgtgcgttatctcgaagcgggatacagagaccgttactatgaggctaagttcggcgct
tcttcgccagaagaggttgccgacattcgtaaaaaagttgtccgcgcctacttggaaggt
atttcatgggtgttattgtattactaccaagggtgtccctcgtggcaatggtattttcct
taccactacgccccctttgctgcagatttcaccaatctacgtgaaatcgttggcgaggaa
ggaatcaaattcgatttgggtgaaccattcaatccgtatgagcaacttatggctgttttg
cctgctgcgtccggccacacgttgccagaagtgtttcgcagcttaatgtctcacccagac
agtgagattatcgacttttaccctgagaccttccaaattgatatgaatggggctaaaatg
agctggcagggtattgcattgttgccgttcattgatgaaaaacgtttgcttactgcagtt
agagcaaaatattccctattaacggatgatgagcgagagcgcaacactaacaaaaaagcg
caattgttcatttcaagtggtaatgcgaactacaagaagtttatccaagcatgtgaggag
gaccgtgagatttcattcggtgcccacagaacaggcttggctggcaaaatacgcccttta
ttatctttttcgccagatggagaaacattgttccctttgaaggaaggtgagatgcccaac
gttcccaattctgcttacttccaggcttggtacgactttccagaactgtacccaggtaag
tctatgttattgaacggatacataccacatgaaaaagtgcttgatgaactggataaatac
acagttctcggtcgcctgaggccaaactacaacttccagaatgtgagtagttatgtgaat
catggaccgtgcggagaaaaggatttcctcatgtattcaatgcgccgtggcggttacaga
gcattacttgagatggggcggaacgcaaaccagacgaggaaccaaggcagaagtaaccat
agtcaaggaaacggcaactacggaggaaagcactacgggaacaatcaccatggaaacagc
aattatggaaataactatggaaaccaatacggaaactatggcaataatcaatacgggaac
caaaactacggcaaccagaattatggtaacaaccaatatggtaaccagtatggaaacaac
caatatggcaaccagaatcaatacgggaatcagtatggaaaccaaaaccaatacggaaat
cagtatagaaacaactatggaaacaaccaatatggaaacaaccaataccagggtcaatat
ggccaccaaaaccaaagccgggaagaccagtatggaagccactcttactccaatcacaac
caaaatactcacggtcggctgaactaccagtctaaccgtggcggcaggtctggctacaga
cgttaa
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integrated database retrieval system
