Clavispora lusitaniae CBS 6936: A9F13_03g03333
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Entry
A9F13_03g03333 CDS
T05147
Name
(GenBank) putative DEAH-box ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
A9F13_03g03333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clus03041
]
A9F13_03g03333
Enzymes [BR:
clus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A9F13_03g03333
Spliceosome [BR:
clus03041
]
Complex C
Other components
Step II factors
A9F13_03g03333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
S1
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
T2SSE
Flavi_DEAD
ATPase
AAA_11
AAA_16
SRP54
CIS_TMP
Motif
Other DBs
NCBI-ProteinID:
OVF10182
UniProt:
A0AA91Q3M2
LinkDB
All DBs
AA seq
1105 aa
AA seq
DB search
MSGPLLKKVAAAVEKHLGVADSDETLSRFLLSLYEEPLEAFSRAVEANGGSDFPPAFVHE
VFEAIREESKSKESKESKSKESKDGSKREEQVETEPENQVHEKQAETQRERLPSERSKDT
GTEQKTQKDHNNQHQNRQNPNQQNHQSLQNHQSSQNSQNHQNSQNQHAPEPNIVVGAVCR
GTVSNITSYGAFVRLNRFESGLCHISKMSYDGRRVGSPGDVVKQNQEVFVRITEIGSGRR
RKIALSMVGVDQTNGEYVEGRESGRDTEFGRRGREMGRDRAVSSGARRLTSPERWEIRQL
IAAGAARASDYPELYEVEEDPAESEGFEVEINPHEPKFLQGQVRARAEPAHIVKNPEGSL
SRAAMDGSRLAQEMREQKKEQRKKEQRKKEQKQQGTEGQNKDKEQSKDKEQSKDKEQASY
SKSRKNVSKSSDLAQSRKRLPVYAMREQLLSAVRDNQFVIVVGETGSGKTTQIVQYLYEE
NFHRGDKIIACTQPRRVAAESVAKRVAQEVGCPLGQEVGYTIRFDDRTSPATRIKYMTDG
MLQREALLDPQMSKYAVVMLDEAHERTVATDVLFALLKKAARANPDLRVLATSATLDADK
FSRYFGGCPVLHVPGRTFPVEIMYSREPEPDYVAAALDCVMQIHVAEDSGDILVFLTGQD
EIDTCCEALEARIKTLGRAVPELLVLPAYSALPPDQQARIFEPAPPGARKVVLATNIAET
SITIDGIRYVVDPGFVKLNAYDPRLGMDSLVVSPISQAQANQRSGRAGRTAPGKCFRLYT
EEAFRTEMRPNTVPEIQRQNLEHTILMLKAMGIDDVLRFEFMDPPPAPTTVQALKELYVL
DALDENGHLTSMGRRMADFPMEPALAKTVLASVDLSCASDVLSVVAMLSVQNVFYRPKDK
QAAADQRKQRFHSVHGDHLTLLNVFRGWEQSGRSRSWCAENFVQERAMWRAFEVRKQLAA
IMVRFRLDVHGSDASAVRKAFCAGYFRNSAKRDPHEGIFTTLVDQTPVHLHPSSAVYGKS
VDYVIYHTLLLTTKEYMHCVSVVDPKWLVELAPRFFQPSDPNNPSERRKRQKIVPLFNRF
AENQDSWRLTAQVEEKKRALGRLNQ
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgtctggccctcttttgaaaaaagttgccgccgccgtcgaaaaacatttgggcgttgcc
gactcggacgagacgctctcgcggtttcttctaagtttgtacgaggagccgttggaggcg
ttttctcgggcggtcgaggccaatggcggaagcgactttccgcccgcgtttgtgcacgag
gttttcgaggcgataagagaggagctgaaactgaaagaactgaaagagctgaaactgaaa
gaactgaaagacggactgaagagagaagaacaagtggagacagagccagagaaccaggtg
catgagaaacaagcggaaacgcaaagggaaaggctaccgtctgaaaggtccaaagacact
ggcacggagcagaaaactcaaaaggatcacaacaatcagcatcagaatcgtcagaatccg
aatcagcaaaatcatcagagtctacaaaatcatcagagtctgcaaaatctgcaaaatcat
caaaatctgcaaaatcaacacgcccctgagccaaacattgtggtcggcgccgtctgccgc
ggaaccgtgtccaacatcacactgtatggcgcttttgtccgcctcaaccggttcgagtcg
ggcctctgccacatcagcaaaatgctgtacgatgggcgccgcgtgggtctgccaggcgac
gtggtgaagcagaaccaggaggtttttgtgcggatcacagaaattggctcgggtcgtcgc
cgcaaaatcgccctttccatggtgggcgtcgaccagaccaacggcgagtatgtcgagggg
cgagagtcggggcgcgacaccgagtttgggcggcgcggccgagaaatggggcgcgaccgc
gcggtttcttcaggcgcgcgccggctaacgtcgcccgagcgctgggaaatccgccagctt
atcgccgccggcgccgctcgcgcctcagactaccccgagttgtacgaggtcgaggaagac
ccggccgaaagcgagggctttgaagtggagatcaatccgcacgagccaaagtttttgcag
ggccaggtgcgggcgcgagccgagccggcgcacattgtcaaaaaccccgagggctcgttg
tctcgggccgcgatggacgggctgcggttggcacaggaaatgagagagcagaagaaggag
cagagaaagaaggagcagagaaagaaggagcagaagcagcagggcacggaagggcagaac
aaagacaaagaacagagcaaagacaaagaacagagcaaagacaaagaacaggcttcatac
tccaagtctagaaaaaatgtttccaagtcgtccgacctcgctcagctgcgcaagcggctt
cccgtctacgccatgcgcgaacagctcctctcggccgttcgagacaaccaatttgtcatt
gtggtgggcgagaccggttcgggcaaaacaacccagatcgtccagtatctctacgaagaa
aacttccaccgcggcgacaagatcattgcatgcacccagccgcggcgtgtggcagccgag
tccgtggcgaagcgtgtggcccaggaagtcgggtgtccgctaggccaggaggtgggatac
accattcgtttcgacgaccgcacgtcgccagcaaccagaatcaagtacatgaccgacggt
atgcttcagcgcgaggcgttgctcgacccgcagatgctgaagtatgcggtggtgatgttg
gacgaggctcacgagcggactgtggccaccgatgtgcttttcgctttgctcaagaaggcg
gcgcgggccaacccggaccttcgtgttctcgccacgtcggccacgcttgatgccgacaag
ttctcgcgctattttggcggctgccctgtgcttcatgttcccgggcggacttttcccgtt
gagatcatgtactcgcgggaaccagagcccgattacgtggccgcagctcttgactgtgtg
atgcagatccacgtggccgaagactcgggcgacattcttgtgtttcttaccggtcaggac
gagattgacacctgctgcgaggcgcttgaggcccgtatcaagacgttgggccgtgccgtg
ccggaacttctagttttgcctgcctactcggctttgcctcctgaccaacaggcacgaatc
ttcgagccggcgccgcctggcgcccggaaagtggtattggctacaaatatcgccgaaacg
tccatcaccatcgatggcatccgctatgtggtagaccccggttttgtcaagctcaacgcc
tacgacccgcggcttggaatggacctgttggttgtgtcgcccatttcgcaggcccaggcc
aatcagagaagcggaagagcaggcagaacagcaccgggcaagtgtttccgtctctacacg
gaagaggctttccgcacagaaatgcggccaaacactgttcccgagatccagagacagaac
ttggagcacaccatcttgatgctcaaggcgatggggatcgacgatgtgctccgattcgag
ttcatggaccctcctccggctccaaccacagtacaggcgttgaaagagctctatgttctt
gatgcgctcgacgaaaacggccatctcacctcgatgggccgccgcatggccgatttcccg
atggagcctgcgcttgcgaaaactgtcctagccagtgtggatctttcgtgtgcttcggac
gttttaagcgtggtggccatgttatcggtgcagaatgtgttttaccggccaaaggacaaa
caggccgccgcagaccagcgcaagcaacgttttcatagtgtccacggcgaccatctcact
cttttgaacgttttccgtggctgggaacaatccggtcgctcgcggtcctggtgtgccgag
aattttgtccaagaacgagccatgtggcgagcttttgaagttcgcaagcagcttgcggca
ataatggtgcggtttcggctagatgtccatggatcggacgcttctgctgtccgcaaggcg
ttttgtgcgggctacttccgcaatctggccaagcgagacccccacgaaggaatctttact
actttggtcgaccagaccccagtgcatttgcatccgctgctggcagtgtatgggaaaagc
gtggactatgtgatttaccacacgcttcttctcactacaaaagagtatatgcactgtgtc
agtgtcgttgatccaaaatggcttgtcgaattggcaccgcggttcttccagcctagcgat
ccgaataacccaagcgaacggcgcaagaggcagaagattgttccactcttcaataggttt
gctgaaaaccaggactcttggaggttgaccgcacaagtggaggaaaagaaacgggccttg
gggcgcttgaaccagtga
DBGET
integrated database retrieval system
