Clavispora lusitaniae CBS 6936: A9F13_04g02310
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Entry
A9F13_04g02310 CDS
T05147
Name
(GenBank) putative poly(A)-specific ribonuclease subunit
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9F13_04g02310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_04g02310
Enzymes [BR:
clus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
A9F13_04g02310
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
A9F13_04g02310
mRNA degradation factors
3'-5' decay
Pan complex
A9F13_04g02310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
Motif
Other DBs
NCBI-ProteinID:
OVF09735
UniProt:
A0AA91Q2D7
LinkDB
All DBs
AA seq
1194 aa
AA seq
DB search
MDGWEEVARIPATARTGAHANADPPQITSLVFDHTQNLVWCGDSAGFSSSFTPAAPEPDA
YALGVHVPLYRYTKFRSSVANAPIIQHMNHQKGVLALSTSCVSFHTRRGLAQAWITPDAL
DAPAQNVFRNLTCMTLAYSTSSDLIVGGNSSLFKMDLQKPSRLQPFDHRGDLSFINYSSK
MLTLGHSSGSLEIFDPLANASVKTFAGHNGLLSDLDVKGNYVATCGYSVRNRRFGSSPEY
TVDPLVNLYDLRMMRALPPVSFPAGASFVKFHPKLPNIAVVASTTGQIQFVDIYDSSSLY
LYQADLSDSVSTSLSSAPNSYLSNLDISENGEFLCFSDGFRNMHLWSLSASSSRDFVNFP
APLDQPDIVDNAVSSNPISLDESVPLNTVGMPYYKEFLTSNYPSDMVFDKELSKMPEKID
SHLSELSESEPGKILPYDKSKYGPRNVLKPHQSLEVNVRNTGRRNQTQASLIPKFISERS
STPVSLPYREDSPFLSQTPTFGDEVENDYSNGNAQANDAANIASTVFQYKSPVENKVPSC
YTRLEIHYSKFGVDDFDFEYYNHSGGFFAGLENHIDNSYVNPLLQIYRFIPIFYNTVTKS
LLNEWLPNSLETFIQQSNPQGSSVLNELAYLFDMMHKAGPRNVSISNFSSILSENQIAKA
HKLINKDDGKSLNSRELQMLIITFNKFLVESVVNDYASQFAINVQDMTAMHYELTFSTTS
GEFLDKHIGNQATLDLVTPPNNILNKINQNNPDRYTPPQLLSRKNHNLLTYLEYSLNQTK
VLPATSQTPYPVEVKQTLIKLGSVLSINLPFTEQEFSVIKNYKKWLVPEFYTTTGSSGKV
CFKPVITQFNQRAEKYELLGYVCEVNRGSASSPGQHNLVSFVKVQMPSSGKDQWILFNDF
LVMPIPEEEVFNLSYNWKKPVVLVYHNVEDPRNQRFTYFEESIFRKLSGLNDSILYRDHF
ACGIREGYKREYELLTRQEAPECGSLVAIDAEFVSLRPELVEVSFTGVRNLIRPTMLSLA
RISALRGNEGPKHGVPFIDDYIVHTKPIHDYLTTFSGIEDGDLDPDRSTKTLVTLQTAYR
RLWLLLNMGCVFVGHGLKSDFRCINLQVPKAQIRDTIEFYFLPDFRRRLSLKFLAYIVLR
ESVQTRNHDSIEDAYTALQLYKKYLEWQSSGDFERALRHIYSEGQQLRFRVPET
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacggttgggaagaggttgctcggattccagccaccgctcggaccggcgcccatgca
aacgcagacccgccgcagataacctctctagtatttgaccacacacaaaacttggtgtgg
tgcggcgactctgcgggcttttcgtcgtccttcacgcctgccgcgccagagcccgacgcc
tacgccttgggcgtccatgttcctctatatcgatacaccaagttccggtcgctggtggcc
aacgcgcccataatccagcacatgaaccaccagaagggcgtgttggcgcttctgacgtcg
tgcgtcagcttccacacgcgccgcggcttggcccaggcgtggatcacgcccgatgctcta
gatgcgccggcccagaacgtgtttagaaacctcacgtgtatgacgctagcgtactccacg
tcgagcgatctcattgtgggcggcaactcgtcgcttttcaaaatggacttgcagaagccg
ctgcggctccagccctttgaccaccgcggcgacctctcgttcatcaattactcgctgaag
atgttgacgttgggccattcctcgggctccttggagatattcgacccgctcgccaacgcg
tcggtcaagacgtttgcgggccacaacggcttgttgtccgacttggacgtcaagggaaat
tacgtcgccacatgcggctactctgtgagaaaccgccgcttcggctccagtcccgagtac
accgtggatccgttggtcaacctttacgacttgcgcatgatgcgtgccttgccgcctgtc
tccttccctgctggcgccagttttgtcaagttccatccaaagttgcctaatatcgccgtg
gtggcatctacaaccggccagatccagtttgtggacatctacgacctgctgctgctctac
ttgtaccaagcagacttgtctgactctgtttcgacctccctatcatcagctcccaactca
tacttgtcgaacttggacattagcgagaacggagaattcttgtgcttcagcgacggcttc
cgcaacatgcatctctggtctctcagcgcatcctccagcagagactttgtcaatttccct
gctccattggaccagcctgatatcgtcgataacgcagtgtcgtccaatcccatcagtttg
gacgagtctgtgcccttgaacacggtggggatgccctactacaaagaatttctcacctca
aattatccgtcagatatggtgttcgacaaggagctcctgaaaatgccagagaaaatcgac
tcgcatttgtcggagctcagcgaatcggaaccggggaagatcttgccatatgataaatcg
aaatatggcccacggaacgtcttgaaaccgcatcaactgttggaagttaatgttcgtaat
accggcagaaggaaccagacccaggcaagcttaataccgaagttcatcagtgaaagaagc
tcaactcctgtgtcattgccgtatcgtgaagattccccgtttcttagtcagactccgact
ttcggcgatgaagtggaaaatgactactcgaatggaaatgcgcaagcaaacgatgcggca
aacatcgcatccaccgtatttcagtacaagtctcccgttgaaaataaagtgccttcgtgc
tatacgagactagaaatccattactctaaatttggtgttgacgactttgactttgagtac
tacaatcactcaggaggattctttgctggtctagagaatcacatcgataactcatacgtt
aacccgctattacaaatttaccgcttcattcctattttctataacactgttacaaaaagt
ttgctaaatgagtggcttcccaacagcttagagactttcattcaacagtcaaatcctcaa
ggctcatcggttcttaacgagttggcgtacctttttgacatgatgcacaaagctgggcct
aggaatgtgagcatctctaatttttcgctgattttgagcgagaaccaaatcgcaaaagct
cacaaattaattaataaggacgacgggaagtcgcttaactctagagaattgcaaatgttg
atcatcacttttaataagtttcttgttgaatcagtggtcaacgactacgcgtcacaattt
gcgatcaatgttcaagatatgaccgctatgcattacgagctcacattttccacaacttca
ggggaatttcttgacaaacacattgggaatcaggcaaccttggatttagtgactccacct
aataacatattgaacaaaatcaaccagaataatcccgacagatacacacccccgcaactt
ctatcgaggaaaaatcataatttgctcacatacttggaatactcactcaaccaaacgaag
gttttgccagcgacatcacaaactccatatccggttgaagtaaagcaaacactcataaaa
ttgggctctgttttactgataaatctacctttcacagagcaagaattcagtgtcatcaag
aactataaaaaatggcttgttcctgaattttacacgactacaggttcgtcaggaaaagtt
tgttttaaaccggttatcacgcagtttaatcaacgggcagaaaaatacgaactacttggt
tatgtgtgcgaagtcaatagaggttcagcatcatccccagggcaacataatttagtctcg
ttcgtgaaggtgcaaatgccttctctgggcaaggatcaatggatcttatttaacgacttt
ttggtgatgccaattcctgaagaagaggttttcaacctctcttacaattggaaaaagcct
gttgttctagtataccacaatgtggaagatccgcgcaatcaaagattcacatatttcgaa
gaatcgattttcaggaagctcagtggcttgaatgatagcattctctaccgtgatcatttt
gcgtgtggaattagagaagggtataaacgagaatacgagcttcttacgcggcaagaggct
cccgaatgcgggtctttggtggccattgacgctgaatttgtttcattgagaccggagttg
gtggaggtgagctttactggcgtccgcaatttgatccgtccaactatgctttctctagca
agaatctctgccttgagaggcaacgagggcccaaaacacggagtacccttcattgacgat
tacattgtgcacacgaaacccattcatgactacttgacgacattttccggaatcgaggat
ggtgatttggatcctgaccgctcgaccaaaacgcttgtaacgttacagaccgcttatcgg
cggctttggcttttgttgaacatgggctgtgtgtttgtgggccatggactcaagagcgat
ttccggtgcatcaaccttcaagtgcccaaggcgcagatccgagacaccatcgagttttat
tttttgcccgatttccgcaggcgactcagcttgaagtttttggcgtacattgtgttacgg
gagtctgttcagacacgaaaccatgactcgattgaagatgcgtacacggcgcttcaattg
tacaaaaaatatttggagtggcagtcttctggtgatttcgaaagagcgttgcggcacata
tatagcgagggccagcagttgcggtttcgtgtccccgagacatga
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integrated database retrieval system
