Clavispora lusitaniae CBS 6936: A9F13_06g01419
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Entry
A9F13_06g01419 CDS
T05147
Name
(GenBank) putative pre-mRNA-splicing factor
KO
K12830
splicing factor 3B subunit 3
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
A9F13_06g01419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clus03021
]
A9F13_06g01419
03041 Spliceosome [BR:
clus03041
]
A9F13_06g01419
03036 Chromosome and associated proteins [BR:
clus03036
]
A9F13_06g01419
Transcription machinery [BR:
clus03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
A9F13_06g01419
Spliceosome [BR:
clus03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
A9F13_06g01419
Complex B
A9F13_06g01419
Complex C
U2 SnRNP specific factors
A9F13_06g01419
Chromosome and associated proteins [BR:
clus03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
A9F13_06g01419
TFTC complex
A9F13_06g01419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_pof12
EMC7_beta-sandw
Motif
Other DBs
NCBI-ProteinID:
OVF09008
UniProt:
A0AA91Q0C8
LinkDB
All DBs
AA seq
1215 aa
AA seq
DB search
MPPGNDSLFLYNLTLQPPSSAHKSLVGQFSGQKKTQELILATSTTIEIYRPDTEKGKLRK
LMVQHAFAIVQNIDKIRLTGTQKDLLIITSDSGKVVVAEFNEALSKFVPIVQEPHSKNGL
RRVTPGEYLCVEPDNRAVMIAAVERNKLVYKVEMQNESGILKLSSPLENTSKNTLTLNLC
ALDTNYENPLWAAIEIDYSNYENREYDSQSSPLQLNYYELDQSLNHIILKKSKPDIDASA
NLLIPLPAPAGGVLICCKSYLIYESTPGGTRKYLQFPVRSDTSEVVITNFYVHKLKKKEF
FVLVQSSLGDLFKITVSIEGETLTAFYATYFDTIPVCTSLNIFNSGFLFANSTDNNKFFY
QFESLGEADDTTTSSVSEKSDFPTKTFFDPRGLKNLSLVEVLGSLSPLVDSTMLETYSSE
FPDPLKQLVTLASNSYMKTLTYGVPVSELVSSPVPINPTSIFTTKISKKSINDDYLVLTS
SLTMKSMVLSIGEVVEEVSDSGFALDQHTIAVQQIGQHSLVQVHNNGIRHIRNFFDDSDN
VMSKRETNWYPPAGIVILHASTNNEQVLVGLSNREVCYFEIDPADDQLIEYQERLEVTGG
SITALALASKFVTEGDRKSNFAVIGTSEETIQVISLLPKTCFEIVTLQALSANCFSLLMM
PLDKDNYFVHIGMINGVYARVRIDVVSGKLGDSRLKYLGTQPVSLRSLALPNVASSGILA
ISSRPWIGYFNNESNFKLTPLIDISIKDGSAFYSEDIGIESVVGIRDGEITIFTVGGEEA
EGFDVTNDLTISSIKLRYAPRKQLKDSLTDYFFVIESEFGVISPYLESKEVDAEYFEVFG
YKKKENSWASCLQIVDVAGSGIEYTHEFTNNECTISLASIKIRDEEYLIVGTTENLVYSP
HYYSGNSIYTFRIKRNAKKKPELVYLHKTTIEFPPSSLCAFNEKLLVGAGNQLRLYDVGR
KQLLRKTSTKIDFLRRINKIQHIAGDVIVVCDSSESVSFMRFDQTKNQFIAFCNDTAKRQ
ITALEVLDSRTVIAGDRFGNIFVSRIPKNVAEQLENNVLMKFEEETLGASSSRLDKLCDF
YTQDIVTSLHKGSFVVGGSESIIYTGLQGTVGILLPLATTQEVDLLMKLENSLRDYFNDS
FDDFDNTKQGFNLAGREHLKFRGYYNPVENVIDGDFIERFFELNPSAKVKLAGRLDKSPR
DIERKIYDLRNRAAF
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgccaccaggaaatgattctctcttcttatacaatttgactctccaaccaccttctctg
gcacataaatctttagtgggccagttttctggtcaaaagaaaacgcaagaattgatactt
gctacttctaccacaattgaaatctacagacctgatacagagaaaggaaaattgagaaaa
ttgatggttcaacatgcattcgccattgttcaaaacatagacaaaatacgtttgacgggg
acccagaaagatctcctaattattacatcagattctggaaaagtggtggtggctgaattt
aatgaagccttatctaagtttgtccccatagttcaggaaccacattcaaagaatggactc
cgaagggttactccaggagaatatttatgtgtggaaccagacaacagagcggttatgatt
gctgctgtggaacgaaataaactagtctataaagtcgagatgcaaaacgaaagtggcatc
cttaaactctcgtctcctttggaaaacacctcaaaaaacacattgacgctcaacctatgt
gcattagatacaaattatgaaaacccactttgggctgctattgagattgactatctgaat
tatgaaaatagagaatacgactctcaactgtcaccccttcagctcaattattatgagcta
gatcagagtctcaatcatatcattttgaaaaaaagcaagcctgatatcgacgcatctgca
aacctattaattcctcttcctgctcctgctggtggggtcttaatttgttgtaagtcgtat
ctcatctatgagctgacacctggaggcactagaaaatatctccagtttccagtaagactg
gatacttctgaagtagtgataacaaacttttatgtccacaagcttaaaaagaaagagttt
tttgttttggtccaatcgtcgctcggggatcttttcaaaattactgtcagtatcgaaggg
gaaacgcttacggcattttatgctacctactttgataccatcccagtctgcacaagcttg
aacatcttcaacagcggctttttgtttgctaattcgactgataataacaagttcttctac
cagtttgaaagccttggcgaagcagatgacactactacactgtcagtaagcgagaagtct
gattttcccacaaaaactttctttgacccacgaggattgaaaaacttatctttggtggag
gttttgggatctctttctcctctagttgacagtacaatgcttgaaacatactcatccgaa
ttcccagatccacttaaacaacttgtcacacttgcatctaattcatatatgaagactttg
acctatggtgtccctgtgtctgaattggtttcttcacctgtacctatcaaccccacatct
attttcacaaccaagatctccaagaaatccatcaacgacgactatttggttctcacttca
tcgcttacaatgaagtctatggttctttctataggcgaagttgtggaagaagttagtgat
tcggggtttgctcttgatcaacatacaatcgctgttcaacaaataggtcagcactctctt
gttcaggtccacaataatggtattcgtcacatacgtaactttttcgacgactctgataac
gtgatgagcaagagggaaacaaattggtatccccctgctggaattgttattcttcatgct
agtaccaacaacgagcaagtattagttggcttatccaatagagaagtctgttattttgag
attgacccagctgatgatcagttaattgaatatcaagagagactcgaagttacaggaggc
tccataaccgccctcgcattggctagtaagtttgttacagaaggggacagaaagagtaat
tttgctgttattggtacgtcagaagaaaccattcaagtcatttctttacttccaaagacc
tgctttgagatagtaacattgcaagcactttctgcaaattgcttctcacttttgatgatg
ccattggataaggataactattttgtacacattgggatgataaacggagtatacgctcgt
gtgaggatagatgtcgtctccggaaagctcggcgattctagacttaaatacctcgggaca
caaccagtatctctaagaagtttggctttacctaacgttgccctgtcgggtatcctagca
attagctcgcggccatggattgggtacttcaataatgaatccaacttcaaattaactcct
ttgattgatatcagtattaaagatggttcagctttttactcggaagatattggaatagaa
agtgtggtcggaattcgcgatggagaaatcaccattttcactgtgggtggtgaagaagcg
gagggattcgatgtaacaaatgatttaacaataagcctgataaagttacggtatgctcct
agaaagcaattgaaggattctcttactgactattttttcgttattgaatctgagtttggt
gtaatctcaccatacctagaatccaaagaagtggatgcagaatatttcgaggtttttgga
tacaaaaaaaaagaaaacctgtgggcatcttgcttgcagatcgttgatgtcgctgggtct
ggaatagaatacactcatgaatttactaacaacgaatgcactatttcgttagccagcata
aaaattagagacgaggaatatttaatagtgggtacaacagaaaacttagtctattctcca
cattattatagtgggaattccatctacacctttcggataaaaaggaacgccaaaaagaaa
cctgaactcgtttacttgcacaaaactactattgaatttcctccttcatcattgtgtgct
ttcaatgaaaagttgctagttggagctggtaatcaattgagactttatgatgttggtcgc
aaacaactccttcgcaaaacttcgacgaaaatcgattttttaaggcggatcaacaagatt
cagcatattgcaggcgatgtaattgttgtatgcgattctagcgaatcggtatcttttatg
aggttcgatcaaacaaaaaatcaattcattgctttctgcaatgatacggcaaaaagacaa
atcactgccttagaagtactagattctcgcacagtgatagccggtgatagatttggaaac
atttttgttagcaggattccgaagaacgtcgcagagcaattagaaaataatgtcttgatg
aagtttgaggaggaaacattaggtgcatcaagctcaaggctcgataagctttgtgacttt
tatactcaagacattgtaacttctttgcataaaggctcatttgttgttgggggctcagaa
agcattatctatactggtttacagggtacggtgggcattttacttccgttggctactaca
caagaggttgatttattaatgaaacttgaaaatctgctcagagattatttcaatgattca
tttgacgactttgataacacaaaacagggattcaacttagcaggtagagagcatttaaaa
tttagaggctactataatccagtcgagaatgtcattgatggcgattttatcgagagattt
ttcgagttgaatccaagtgccaaagtcaaactagcaggacgattagataaaagtccaagg
gatatcgagcggaaaatttacgacttaagaaatagagccgctttctga
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