Clavispora lusitaniae CBS 6936: A9F13_07g03080
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Entry
A9F13_07g03080 CDS
T05147
Name
(GenBank) putative DNA topoisomerase 2-associated protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9F13_07g03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_07g03080
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
A9F13_07g03080
mRNA degradation factors
5'-3' decay
Decapping complex
A9F13_07g03080
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-ProteinID:
OVF08823
UniProt:
A0AA91T1Z4
LinkDB
All DBs
AA seq
813 aa
AA seq
DB search
MSFFGFDASGAQFQGSKSDGKAYDFQDTYEGLGELEEDDTLNDQTFGVSAVGKDFDFSGT
FNAAGSKPQAEVRPQVSYARAAANDDEFMKDLWGVNPPQKKPEQAAHEEKKVLSLQEIEA
QLTAIDNSQPQGQMPVPPQQQFYPGYPAPQFPGYMMPQGFMPPPGQYGMPYPGQFMPMQA
PIGPNGMTPQGMPPMPMPHQVPPHPQQMPAQQMPPPPQQQQQQQQQQQQQQQQPQQPQHS
VSAPVADQRQSPLKQPVATAPPTHLVAESPTSAASAKVNLSQFPVLGSKGQRLDSPKEAH
VAEQKSPRENQGFSHNRHHISLEELSPEEQAKMARRQEKVSRIMRYSGVMNPKDKDFVTR
FQLSQIVTDDPYNEDFYAQVYKVIHPKVPQNAVGAPPVQQANSIAQAYLDQSGHRLGGRF
RRADVALQRMQQQVQKAVSVAKERQKLPQHVREGVLGKISVGSGKKPRQQLVILSKAAQK
AKESEDSEEGLVPQSKKNRSPSIAAPSKPIKKYTKKDIMCILEDAINNLMAVESESRLSP
DVDTTKLWESLHILDQASSSGDDESFVNPFIQCLNYSKSLKILPRLFKFLTREQILTIVT
LIMSNLENLTVIKNGSYTTYANKRVPENILKLVDTYSLTLCKVLMNAVQDFKFNEIIGLI
LILIQHNVVSFVSTTKIGLSILTTLLSRAELMRGEGSISATDLSEWTSCYDELFTALESR
LAAIFPPGLGDAEDDYVWQFLATLSLGGKLSHQRIIVDEVRDEIFGVMSRAKAIDNSDMA
NLYKKQSMLNNLNMYLVVMGLVADENEIQELKT
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttttggatttgatgcctctggggcccagttccaaggctctaaatccgacggg
aaagcgtatgattttcaagacacctatgagggcttgggcgaactcgaagaagatgacact
ttgaacgaccaaacttttggtgtgagcgctgtcggcaaagatttcgatttttcgggcact
ttcaacgcggctggctctaagccgcaagctgaagtcaggcctcaggtttcttatgctcgt
gcagctgctaacgacgatgaattcatgaaggacttgtggggcgtcaatcctccacaaaag
aagccagagcaggctgcgcacgaagagaagaaggtgttgagtcttcaggagatagaggcg
cagttgacggccattgacaacagccaaccccaaggacagatgcctgttccacctcaacag
cagttttatcctgggtaccctgctcctcagtttcctggctacatgatgcctcaaggtttt
atgcctccaccgggacaatacggcatgccttacccaggccaattcatgcctatgcaagca
ccaattggccccaatggcatgactcctcaaggaatgcctcctatgcctatgccgcatcaa
gtgcctcctcatcctcagcaaatgccagcacagcagatgccaccacctcctcaacaacag
caacagcaacagcaacagcagcagcagcaacagcaacagccacaacaaccacagcactct
gtttcggctcctgtggctgaccaacgccaatctccgctcaagcaacctgttgcaacagcc
ccacctactcatttggtggctgaatccccaacatcagcagcttcggcaaaagttaatttg
tctcagttcccagttttaggatctaagggtcaacgcttggactctcctaaggaagcgcac
gttgctgagcaaaaactgcccagagagaaccaaggattttctcacaatcgtcatcacatc
ctgctcgaggaattgtctccagaagagcaagccaagatggccagacgccaagagaaagtg
tctagaatcatgagatactcaggtgtgatgaaccctaaagataaggactttgtgacgaga
ttccaactctcgcagattgttacagatgacccttacaacgaggacttctacgctcaagtg
tacaaggttattcatccaaaggtaccacagaatgcagtgggagctcctcctgtgcagcaa
gccaactcgattgcacaagcctacttggatcaaagtggccataggttgggtggtcggttc
agaagagcagatgtggccttgcagagaatgcaacagcaagtgcaaaaggctgtttctgtg
gcaaaagagagacaaaaattgccacaacatgtacgagaaggtgtcttgggtaagatttcc
gttgggtcgggtaaaaagccaagacaacaattggtgattttgagtaaggctgctcaaaag
gccaaggaaagtgaagactcagaagaaggcttggtgccacaaagtaagaaaaacagatct
ccttcaattgccgctccttcgaagcctattaagaagtacaccaaaaaagacattatgtgc
attttggaagatgccatcaacaacttgatggctgttgagagcgaatctcgcttgtctccg
gatgtcgataccacaaagttgtgggaatctcttcatattttggaccaggcgtcctcttct
ggagatgacgagtcatttgtcaatccttttatccaatgcctcaattattcgaaaagtttg
aagattcttccacgtttgttcaagttcttgaccagggaacagatcttgaccattgtcaca
ttaatcatgtccaatttagagaacttgaccgtgataaagaacggctcttatactacctac
gcgaacaaaagagtccccgagaacattttaaagttggttgatacgtactctttgacctta
tgcaaggttttgatgaatgcagttcaagacttcaaatttaatgaaatcattggcttaatt
ttgattttgatccagcataatgttgtttcctttgtttctacgacgaagattggtttatcc
attttgacaactcttttgtcgagagcagaacttatgagaggcgaaggttctatttctgca
accgatttatctgagtggacttcctgttacgacgagttatttactgccttggaatctcgc
cttgcagccattttccctcctggtcttggggatgccgaggacgactacgtatggcaattt
ttggccaccttgtctctaggtggtaaattgagccatcaaagaatcattgtcgacgaagta
agagacgaaattttcggagtcatgagcagagctaaagctattgacaattcggatatggcc
aacttgtacaagaaacagagtatgttgaacaacttgaacatgtacttggtggtgatggga
ttggtcgctgatgaaaatgagattcaagagttgaaaacttaa
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