Clavispora lusitaniae CBS 6936: A9F13_08g00814
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Entry
A9F13_08g00814 CDS
T05147
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03013
Nucleocytoplasmic transport
clus03015
mRNA surveillance pathway
clus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
A9F13_08g00814
09122 Translation
03013 Nucleocytoplasmic transport
A9F13_08g00814
03015 mRNA surveillance pathway
A9F13_08g00814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_08g00814
03041 Spliceosome [BR:
clus03041
]
A9F13_08g00814
Enzymes [BR:
clus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A9F13_08g00814
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
A9F13_08g00814
Spliceosome [BR:
clus03041
]
Complex C
Other components
EJC/TREX
A9F13_08g00814
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
A9F13_08g00814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
OVF08387
UniProt:
A0AA91T1V6
LinkDB
All DBs
AA seq
432 aa
AA seq
DB search
MSHEGQEELLDYSDSEEIAVQTSTAPAEDASAGKEADKKGSYVGIHATGFRDFLLKPELL
RAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTL
VICHTRELAYQIRNEYARFSKYMPDVKTDVFYGGTPIARDLEKLKNKDTCPHIVVATPGR
LHALVAEKGIRLGNVKSFVIDECDKVLESLDMRRDVQDIFRNTPHQKQVMMFSATLSQEI
RPVCKKFMQSPLEIYVDDEAKLTLHGLQQYYLKLSEKEKNRKLSDLLDSLEFNQVIIFVK
STQRANELNKLLCACNFPSIAVHSGMKQEERIARYKSFKEFNKRICVSTDVFGRGIDIER
INLAINYDLPSEADQYLHRVGRAGRFGTKGLAISFVSTKEDEEVLEKIQSRFDVKVTEFP
EEGIDPSTYMNT
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaaggccaagaagaattgttggactactctgactcggaagaaatcgccgtg
caaacttcgacggctccagccgaagatgcttctgctggcaaggaagctgacaagaaaggc
tcttatgtgggtatccacgccactggtttcagagacttccttttgaagccagagttgttg
agagccattggagactgtggttttgaacatccatctgaagtccagcaggtgtgtatccca
caatccatcttgggtaccgatgtcttgtgccaagccaagtctggtttgggtaaaactgct
gtttttgtcttgtctactttgcaacagttggacccagttccaggtgaaatttccaccttg
gtgatctgtcacaccagagaattggcttaccagattcgtaacgagtacgctcgtttctcc
aagtatatgccagatgtcaagaccgacgttttctacggaggaaccccaattgctagagac
ttggagaagttgaagaacaaagacacttgtcctcacattgtcgtggctactccaggtaga
ttgcacgcgcttgttgcagaaaagggcattcgtttgggcaacgttaagtcgtttgttatt
gacgagtgtgacaaggtcttggagtccttggacatgagaagagatgtccaagacatcttc
agaaacacccctcaccagaagcaggtgatgatgttttccgccaccttgtcgcaggaaatt
cgtccagtgtgcaagaagttcatgcaaagcccattggaaatttatgttgatgatgaggcc
aagttgactttgcacggtttgcaacaatactacctcaagttgtctgagaaggaaaagaac
agaaagttgtcagacttgttggactctttggaattcaaccaggttattattttcgtcaaa
tctacccagagagctaacgagttgaacaaattgttgtgtgcttgtaacttcccttccatt
gctgtccactcgggcatgaaacaagaggagagaattgctagatacaagtcgttcaaggaa
ttcaacaaacgtatctgtgtctcgactgatgtgttcggtagaggtattgatattgaaaga
atcaacttggccatcaactacgacttgccaagtgaagctgaccaatacttgcacagagtc
ggtagagctggtagatttggtactaagggattggccatttcctttgtttccaccaaggag
gacgaggaagtgttggaaaagatccaatcgagattcgacgtgaaggtcacagagttccca
gaagaaggtatcgacccttccacctacatgaacacttga
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