Clavispora lusitaniae CBS 6936: A9F13_10g01177
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Entry
A9F13_10g01177 CDS
T05147
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03013
Nucleocytoplasmic transport
clus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
A9F13_10g01177
03015 mRNA surveillance pathway
A9F13_10g01177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_10g01177
Enzymes [BR:
clus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
A9F13_10g01177
5.6.2.5 RNA 5'-3' helicase
A9F13_10g01177
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
A9F13_10g01177
mRNA cycle factors
Common to processing body (P body) and stress granule
A9F13_10g01177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
Viral_helicase1
SLFN-g3_helicase
ResIII
AAA_16
DEAD
NPHP3_N
Helicase_RecD
AAA_22
UvrD_C_2
UvrD-helicase
PhoH
AAA
nSTAND3
NLRC4_HD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
OVF07978
UniProt:
A0AA91PZR6
LinkDB
All DBs
AA seq
949 aa
AA seq
DB search
MGSTTTSSDEHETRAAAGTPVLDPSVPIDGGAPSQPLSLTDETEHLTAYQHGNENESEKD
GEHDHEAEPTEACSYCSTSDPASLARCGTCQRWFCNGSSSKAGSHIVAHLVHSKHSEISL
HEQSALGGDPLECYNCGSRNVFALGFVAAKQESVVVLLCRMPCAQARDINWATNEWQPLV
EARALLPWVAAQREPARDVKPAQMARLEAQWRVKRDATLADVDADADGARDLAMALLRYP
DALEYQHVWAPLVEAEAACDKFMKESRVLDHLSVTWGTVASGRHTASFIVSTYETSELHV
AVGDEVVLHHRDFGAAEWSGAGVLVAVPGARTDIYTVELQPSVVPPQATTGFSAEIVWKG
TPYQRMQHALFRFATSNESVSAYVYHKILGHDVVEVEFDGENSLNNKRCSALNASQRAAV
AHAIASPLTLIQGPPGTGKTVTSAAIVRELVRLRRSRVLVCAPSNVAVDHLALKLRAAGL
KVVRLAARSREDIESEATPLALHTQVRAAIPRRVRTLVDKQASGGELDARAKARIARSWR
AAEQKLISSADVICTTCVGADDRRLEDYEFPIVLVDESTQATEPEALIPITRGAKQVVLV
GDHQQLGPVVLDPAASAAGLRRSLFERLVSMGHVPLRLEVQYRMHPALSEFASNMFYEGS
LLNGVTSDDRTRPGADFPWPVPDRPMMFWANYGKEEIGANGSSYLNRVEAMNVDKIIARL
VRDGVSPDQIGVITPYEGQRVYIWQYLKLNSTVPKSALNELEVEVSSVDAFQGREKDYII
LSCVRANEDRDIGFLKDSRRLNVALTRAKFGLIILGNPRSLSKNKLWNSLLVHYRERGCL
VEGPLDNLNLSLVPLGQTSNQEKSFISGPRNTDFDTQSMISHVVDGDDPEFHYDAPQESP
LHDDVVWPSLSNNAASRLQEKKSQPSAYPKIAEDDLKAFASAFASGLNL
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcactacaacaagcagcgacgagcatgaaacgagagccgctgctggcacgccc
gtattggatccatctgtcccaatagacggcggagcgccgtctcaaccgctctcgcttact
gacgaaaccgaacacctcaccgcataccaacatggaaacgaaaacgaaagcgaaaaagac
ggcgaacacgaccatgaagccgagcctactgaagcatgctcctactgcagcaccagcgac
cctgcttcgcttgcccggtgcggcacgtgtcagcgctggttctgcaacggctcgagcctg
aaagccggctctcatatcgtggcgcacttggtgcacctgaaacacagcgagatctctttg
cacgaacagctggccttgggcggcgacccgttggaatgctacaactgcggcagccgcaac
gtgtttgcgcttgggtttgtggcggctaaacaggagctggtggttgtgcttttgtgccgc
atgccgtgcgcccaggcgcgcgatatcaactgggccaccaacgagtggcagccgctcgtg
gaggcgcgcgcgctcttgccgtgggtcgccgcgcagcgcgagccggcgcgcgacgtcaag
ccggcgcaaatggcgcgcctcgaggcgcagtggcgggtcaagcgcgacgccactttggcc
gacgtggacgccgacgccgacggcgcgcgcgaccttgccatggcgcttttgcggtacccg
gatgcgctcgagtaccagcacgtttgggcgcctcttgtggaggcggaagcagcatgcgac
aagttcatgaaggagctgcgcgtgttggaccatcttctggtcacatggggcaccgttgcc
tctgggcgccacacggcgctgttcatcgtgtcgacctacgagacgagcgagttgcatgtg
gcggtgggcgacgaggtggtgttgcaccaccgcgatttcggcgccgccgagtggagcggc
gcgggcgtgttggtggcggttccgggcgcacgcaccgatatctacaccgtcgagttgcag
ccaagcgtggtgcctccgcaggcaaccaccgggtttctggcggaaatcgtgtggaagggc
acgccgtaccagcgcatgcagcacgcgctcttccgctttgccacctccaacgagtctgtg
tcggcgtatgtctaccataagatattgggccacgatgtggtggaggtggagtttgacggc
gagaattctctaaacaacaaacggtgcagcgccctcaatgcgtcccagcgcgcggcagtg
gcccatgcgattgccagtccgcttacgcttatccaaggcccgcccggaactggtaagacc
gtcacttctgcggcgattgtgcgcgagctcgtgcggcttcggcgcctgcgggttttggtg
tgtgcgccttcgaacgtggcggtcgaccatttggccctcaaacttcgcgccgcgggcctc
aaggtggtgcgtctcgcagcacgctcgcgcgaagacatcgagtccgaggcgacgccgctc
gccctccacacacaggtgcgcgcggcgattccgcgcagggtgcgtacactagtggataaa
caggcgagcggaggcgagctcgatgcgcgcgcaaaggctcgcatcgcccgcagttggcgt
gccgcagaacagaaactcatttcgtcggccgatgtgatttgcactacttgcgtgggcgcg
gatgaccgccggttagaggactatgagtttcctattgtcttggttgatgaaagcacccaa
gccaccgaaccggaagcattgattcccatcacacgcggcgcaaaacaggttgtgctcgtg
ggcgaccatcagcaattgggcccggtggttttggaccccgccgcaagcgctgctggactc
cgcaggtcgcttttcgagcgccttgtgtccatggggcacgttcctttacggctcgaagtg
caataccggatgcacccagcactctccgagtttgcgtccaacatgttctacgaaggtctg
cttttaaacggcgtaaccagcgacgaccgcactcgcccgggcgcagacttcccatggcct
gttcccgaccggcccatgatgttctgggccaactacggcaaagaggagattggtgccaac
ggcagttcgtacttgaaccgtgtggaggcaatgaatgtcgacaagattattgcacggctt
gtacgtgacggtgttctgcccgatcagattggtgtgatcactccatacgagggccagcgt
gtctacatatggcagtatttgaagttgaacagcactgttcctaagagcgctttgaacgag
cttgaagtggaagtgtcttcagtggatgcatttcagggtcgtgagaaggattatatcatt
ttgctgtgtgtccgtgccaatgaagacagagatatcggtttcttgaaagacctgcgccgt
ttgaatgtggcgcttactcgtgccaagttcggcttgattattttaggaaacccccgttcc
ttgagtaaaaacaagctctggaacagtttgttggtgcactaccgtgagaggggatgtctt
gtagagggtcctttggacaatttgaatctctcgcttgtgcctttgggtcagacgtccaac
caggaaaaactgttcatttccggccctcgcaacacggacttcgacacccagtcgatgatt
tcgcatgtggtggatggagacgacccagaattccattacgatgcaccacaggaactgccg
ctacacgacgatgtggtatggccaagtctttcgaacaatgcggcttcacgtctacaagaa
aagaaatcgcaaccatcagcgtacccaaaaattgctgaagatgatctcaaggcgtttgcc
agcgcctttgctagtgggcttaacttgtaa
DBGET
integrated database retrieval system
