KEGG   Clavispora lusitaniae CBS 6936: A9F13_10g01463
Entry
A9F13_10g01463    CDS       T05147                                 
Name
(GenBank) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
clus  Clavispora lusitaniae CBS 6936
Pathway
clus03013  Nucleocytoplasmic transport
clus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:clus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    A9F13_10g01463
  09122 Translation
   03013 Nucleocytoplasmic transport
    A9F13_10g01463
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clus03019]
    A9F13_10g01463
   03041 Spliceosome [BR:clus03041]
    A9F13_10g01463
Messenger RNA biogenesis [BR:clus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     A9F13_10g01463
Spliceosome [BR:clus03041]
 Complex C
  Other components
   EJC/TREX
    A9F13_10g01463
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    A9F13_10g01463
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_HPS5 EIF3I WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_IP5PC_F Beta-prop_EIPR1 B-prop_COPA_B_2nd eIF2A Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st Tricorn_2nd Beta-prop_TEP1_C BBS2_Mid WD40_2 WDR93 NBCH_WD40 CRT10
Other DBs
NCBI-ProteinID: OVF08003
UniProt: A0AA91PYK4
LinkDB
AA seq 316 aa
MSAFFSNLRLFPARDLGSNGKPTQSEIVHVSINATGSRVINTRTDRSIRIWRSTVSLTDP
IVIENPHRGPVTCISWNPATETSFASVGGDGAVKLWKGSGHLEREIKLGKTAAHLVAYAP
DGDVMAVVADGSISIYNVAKGYTKIAHDSRPSKINALQWTNKGHNVFATGHDDGSICFWR
LDSMAIELLYTLQGHHSPVTCMCLDPRGRYLACGSREGIVSLWNTTDFTNLGVLSAVDRA
ISSLSASRDGAYLAVGYSEGADVKIYEYDTLTEVYNAPKSQAGKIGGEAVWFPNRTALII
VVDKGQVMSLAKKEVS
NT seq 951 nt   +upstreamnt  +downstreamnt
atgtctgctttcttttccaatctccgcctattccctgctagggatcttggaagcaatggc
aaacccactcaaagtgaaattgtacatgtttcaatcaatgcaacgggctcgcgtgtcata
aacacccgcacagatcgttcgattcgaatctggcggtctactgtatcattgacagacccc
attgtcattgaaaacccccacaggggacccgtcacgtgtatctcatggaaccctgctact
gaaacgtcttttgcaagcgttggcggcgatggagccgtcaaactatggaaaggtctgggc
catcttgaacgtgagatcaaattgggaaaaactgccgctcatttggtggcgtacgctcca
gatggtgatgtgatggcagtagtggccgatggcagcatttccatctacaacgtcgccaaa
ggttacacgaaaatagcacacgacagccgccctagcaaaatcaacgcgcttcaatggaca
aataaaggccacaacgttttcgccacgggccatgacgacggatccatatgtttttggcgc
cttgacctgatggccattgagcttttatatacgcttcagggccaccattcgcctgtcacg
tgtatgtgccttgatccaagagggagatatctagcttgcggcctgagggagggaattgtc
tctttatggaacacaacagactttacaaacctcggtgttctttctgcagtcgaccgagct
atcagcagtctttccgccagccgagacggggcgtatttggctgtgggttacagcgaaggg
gccgatgtaaaaatttatgagtacgatacactcacagaagtttacaatgcaccaaagagt
caggcagggaaaattggtggcgaggcagtgtggtttccaaatcggacagcgttgatcatt
gtggttgataaaggacaagtgatgctgctcgctaaaaaagaggtgagctag

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