Clavispora lusitaniae CBS 6936: A9F13_16g00781
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Entry
A9F13_16g00781 CDS
T05147
Name
(GenBank) putative nucleoporin
KO
K14311
nuclear pore complex protein Nup188
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
A9F13_16g00781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_16g00781
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
A9F13_16g00781
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_C
Motif
Other DBs
NCBI-ProteinID:
OVF06978
LinkDB
All DBs
AA seq
1614 aa
AA seq
DB search
MDKSSSLVSKALRPMEMTSSWTFASALALLKTAPEDYISDALDDFLIHNNDVLLSPLPFE
RTDKSKPLDKSTKDFTLRGVLYTGVTPSLVATATSVAELCHTDFKETLRVILQTIARVPE
LSQPEKSVGSIPSRLPNEEDAAVERDRVSFYASVLLKERRTVIRVTAECFNNRFNEYYSS
TVRNLGKSLAGEPSYTVRLVGTAQAVMRRTLSTETSSDLESSVITENVLACVDILKLICE
ILVSSPAIDKSVVQAWFSFMESSNFAHSLGSVIADKELFTLIQALCTIVSLQVFDLSYSH
GNTAPNSYLEDGSVFLHIDNVIRDQDPNDIIKYAWLIMLYKKSIILEEFPQEQTQFLSAM
RLSQVQKSMAVLQQSLDGSKVFEEVRSLNEFLKFDNVFAVVLSNMIMTALPLVSMSSNFA
SCVAEVLRAAPNSSVEKFFENQQAVNALILARAKFPISLEPYLKLASINGNFALHEFEEL
KSYMAVFDKTEFGRMYDIDSENTDLVKTSQIINLYPPFEVNHKLSFLMNYDTKAKIVPTA
DESKILVTFLHKYNGWAFLGRVLQNISKVFDIADQEKTSILHDMLDVLIATTEQNPPESI
HVVLEYMSAYIDDSDIVDVLFRLFEQGLHNRSIELSEKLLRLFTSMMPVISHRIWPYLSA
SSLLPSKGKEGFHSILFGSVEMTKGDYQFTTALVKFVFSLSQNCLSLQTDYPLESKSELF
SRFIEHLLFVFESYTGCKFNDGFQKLELGVLILDVLRQTLESIHLIDPGVDSHKKATHVF
ANASERIVDVFLSTETKFIRSATPILMMIDSVAKSVNYYEAKDFSGFFADVWIHSALSFS
RLLVTIRSTINGVPSAFEKELFARLPQLVTVYSRGGHFRKLTLDLITALTNGVWQHEPMP
SMLSHLGREHSRIFLNSLAVDLDNAFDDYTIKISIYDFLCAIMEANQQGLAILFISGRDV
FGEFTSETKTDAQSVVSLLSILRRNVKNIKYYPHSVTVHLLDAISLAFNSWTTERDEESD
VSFVEELVTMLGNFEKDANPSDSYDFIVASYQSKLYSKVAEILSLVLFTSKNDKFKQSIG
NLLSREDFLSKLPEMFTIKNFQMTLYDQVALQFSNVFPDHKLTQFAVAIQKRNRFGIGAV
YDLILMDTLFQRHPKWKDLRDQIIYSSANIQYFNAQLALAKSLGALITAFCRKVPTKIPR
EYLGLVPKLLNIRDPRDSYTEPFLVQSTAERVELGFLISYTMNNMETVKKSPETALDIIE
ACGDLMRTTEFSDTNGQGVPQRSLLRLIYVALSELKDEYELLIARFSVLNDVFDTVIARR
TKSIVSELQNEVYLSRTHKKRDQSNLELRFDDMKLILSIMKCFLSLNLSSSLLDDLAECL
ANAGTVDSLLSFYSFSHLILVNEEPVCAQLSLMFIQQLLAVDTFAERFVGRNIFMVIRES
VISQALRGGGITISNAPAIYKTWTSGILPILVGALVKTAQLSEVVATIRCFSKQIESCIE
SWARESASLQISTAGTWETTQVLLLYHMLRAVATKYLDNDAEANVPMPGLESQQKRDDFV
DYINNLLKHPKFLSSRVVPSNAEEAAVIKAGGAPMQNLVSGLVEDIGELKQYLL
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atggacaaatcttcgtctcttgtaagtaaggcattgcggcccatggagatgacgtctctg
tggacgtttgcatctgccttggccttgttgaaaacggcgcccgaagactacatcagcgat
gcgctagacgactttttgatccacaacaacgatgttttgctttcaccgttgccgtttgag
cgcacggacaagtccaagccgcttgataaatcgacaaaagacttcacactacgtggcgtc
ttgtacacgggcgtgacaccgagtctagtggccacagccacgtcggtcgccgagttgtgc
catacagactttaaagaaacgctccgggtgattttgcagaccattgcaagagttccagag
cttctgcagcccgaaaagagcgtcgggtctattccatctcgtttgcccaacgaggaagat
gctgccgttgaaagagaccgtgtttccttctatgcctctgttttgctcaaggagagaaga
accgtgatccgcgtgacagctgaatgcttcaataataggttcaacgagtactactcgtcc
accgtccgaaatctcggaaagtcgctcgccggagaaccaagctacaccgtcaggttggtg
ggtaccgcccaagctgtaatgcggcgcactttgctgacagaaacctcgtccgacttggag
tctctggtcattacagagaacgttcttgcttgcgtggacattttgaagctcatttgcgag
atcctagtttcaagcccagccattgacaagtctgtggtccaggcgtggttcctgtttatg
gaaagctcaaactttgctcattccttgggctccgtcatagcagacaaggagcttttcacg
ttgatccaagccctctgcaccatcgtctccttgcaagtgtttgacttgtcctactcgcat
ggcaacacagctccaaacctgtatcttgaagacggatcggtctttttgcacatcgacaat
gttatccgagatcaggatcccaatgacatcatcaagtacgcgtggctcattatgctctac
aaaaagtccatcattctcgaagaattcccgcaagaacaaacgcaatttctttcagccatg
cgtctttcgcaagttcaaaagagtatggctgtgctccagcaatctttggatggatccaaa
gtgtttgaagaagtaagatcactcaacgaatttctcaagtttgataatgttttcgctgtt
gttttgtccaatatgataatgactgcgttgcctttggtttccatgtcttcaaactttgct
tcctgtgttgctgaagttttgcgtgctgccccaaacagctctgtggaaaagtttttcgaa
aaccaacaagctgtcaatgcattgattttggctcgcgcaaagttccccatttctttagag
ccttacctcaaattggcatccatcaacggaaattttgcattgcacgagttcgaagagctc
aagtcttacatggctgtctttgataagaccgagttcggccgcatgtacgatattgactcg
gaaaacacagatcttgtgaagacttctcaaatcatcaacctatatcctccctttgaagtg
aatcacaagttgtcctttttaatgaattacgacacaaaggctaaaatcgtcccaactgcg
gatgaatctaaaatcttggtgacttttcttcataaatacaatgggtgggcattcctagga
agagtccttcaaaacatatcgaaagtgtttgatattgcagaccaggaaaaaacctccata
ttacatgatatgctcgatgttcttattgccacaacggagcagaatcctccagaaagtata
cacgtggtcttggagtatatgtcagcatacattgatgattcagatattgttgatgttctt
ttcaggctttttgagcaaggattacacaacagaagtatcgaattgctggagaaacttctt
cgtcttttcaccagtatgatgccagtaatttcgcatagaatttggccatacttgtccgca
tcctcgcttttgcctagcaagggaaaagaagggttccactcgatattgttcggatctgtc
gaaatgacaaaaggtgattaccaattcactacagcgttggtgaaatttgtgttttctctc
tctcagaattgtctatctttacaaacagattatcctctagagtctaagagtgagttgttc
tcccgcttcattgagcatcttctctttgtgtttgagagctacactggatgcaaattcaat
gacggcttccagaaacttgaactaggtgttttgattttggacgtcctcaggcagacttta
gaatccattcatttgatcgatcccggtgttgactcacataagaaggctacacacgttttt
gcaaatgcgtcagaacgtattgtggatgtcttcctttcgactgaaaccaaattcatccgt
tcggcaacgccaattttaatgatgattgattctgtggcaaagtctgtcaactactatgag
gcgaaagacttttcaggtttctttgcggacgtttggatccattccgcattgtccttctct
cgtcttcttgtcaccatcagaagcactattaacggtgttccttctgcatttgaaaaggaa
ctttttgcgagattgccccaactcgttactgtctattcccgtggaggacatttcagaaag
ttgactttggacttaatcaccgctctcaccaatggagtctggcaacatgaacccatgcct
tcaatgttatcccacctcggcagagaacactctcgcattttcttaaattctttggcggtt
gatttggacaatgcttttgacgattacaccatcaaaatttccatttatgacttcctctgt
gccataatggaagccaatcagcaaggtcttgccattttatttattagcggaagagacgta
tttggcgaattcactagtgagactaaaacagatgcgcaactggttgtatctttgctttct
atcttgagaagaaacgtgaagaacataaaatattatcctcattccgttactgtgcatctt
cttgacgccatttctttggcattcaattcctggactaccgaaagagatgaagaaagcgat
gtttctttcgtcgaagaattagtgacaatgttgggtaattttgagaaggacgcaaaccct
tccgacagctatgatttcatcgttgcttcttatcagagcaaactttactccaaggttgct
gaaattttgtcgttggtattgttcacaagcaagaacgataagtttaaacagtccatcggc
aatctcctttcccgtgaagacttcttgagtaaattgccggagatgtttactatcaaaaac
tttcaaatgaccctttacgaccaagtggcattacagttcagtaatgttttccctgaccat
aagcttacgcagtttgcagtggcaatacagaaaagaaaccggtttggcattggtgctgtt
tatgacctcattctaatggatacgcttttccaaagacatccgaagtggaaagatctcaga
gaccaaatcatatattccagtgccaatatccaatacttcaatgctcaattggcattagcc
aaatctcttggtgcgcttatcactgctttttgtcgcaaggtccctactaaaatcccaaga
gagtatttgggacttgtccctaaactattgaacattcgcgatccaagagatagttataca
gaacctttcctcgtccagctgactgcagaacgcgttgaacttggcttcttgatttcatac
actatgaacaacatggaaacggtgaaaaagtcgccggaaacagctttagacattattgaa
gcatgcggcgatttgatgagaaccactgagttttccgacaccaatggtcaaggcgtacca
caacgttcgttactccgtctcatatatgtggctctttctgagctcaaagatgagtacgag
cttttgattgccaggtttagcgtgctcaacgatgttttcgacaccgtgattgctcgacgc
acaaagagcattgtgagtgaacttcaaaacgaggtttatttatctcggacacataaaaaa
cgggaccagagtaatctcgagcttcggttcgacgacatgaagctaattttgtccataatg
aaatgctttcttctgttgaatctttctctgtcgcttcttgacgatctagctgaatgtcta
gctaatgcgggcacagtggattccttgctcagtttctatctgttctcgcatttgatctta
gtgaacgaagagccggtttgtgcgcagctcagtttgatgtttatccagcaactattggct
gtggacacctttgcggagcgctttgttggccggaatatttttatggtcatccgtgaaagt
gtgatctcacaggctttacgtggaggtggcatcacgatctcaaacgctccggccatctac
aaaacatggactagtggtattttgcccattttggtcggcgccctagtgaaaacggcccaa
ctttcggaggttgtggctacaatccgctgttttagtaagcagatcgagtcgtgtattgaa
agttgggctcgcgagctggcgtctcttcaaatttcgactgctggaacatgggaaacaacg
caagtgttgcttctttatcatatgcttcgagcagtggcaacaaaatatttggacaacgat
gcagaggccaacgttcccatgcctgggcttgaaagccagcaaaaacgtgatgattttgtg
gactacatcaacaacttactcaagcatcccaagtttctctcgtctagagttgttcctagc
aatgcagaggaagctgcagtgataaaagctggcggagcacctatgcagaatcttgtgtct
gggttggtggaggacattggcgagttgaagcagtatttgttgtga
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integrated database retrieval system
