Clavispora lusitaniae CBS 6936: A9F13_16g01078
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Entry
A9F13_16g01078 CDS
T05147
Name
(GenBank) putative pre-mRNA cleavage and polyadenylation factor I subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
A9F13_16g01078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clus03021
]
A9F13_16g01078
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_16g01078
Transcription machinery [BR:
clus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
A9F13_16g01078
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
A9F13_16g01078
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
Motif
Other DBs
NCBI-ProteinID:
OVF07005
UniProt:
A0AA91PX82
LinkDB
All DBs
AA seq
540 aa
AA seq
DB search
MVFSPLVEDYATSLKELTFNSRPIIVNLTTIAKENTDEADGILAAITHRIYHCIPEHKLF
ALYLLDSICKTVGAPYNVLIGDDIFKLFSHVYLLVDTPTRARLVKMFDSWRVFRVKGGAL
PLFPSAEMERIEAFLQQAGFRRAPAGPTAASLVADIDALLPAMERRSRAGGDQALAERCA
ALADLRALLQSQALGPADLAGVSQKLASMKQQEQNQQNLETQAHQQSMSQNQGSSFQPQT
PITQPQTPLPQTPSTLPPTPQTLPAQSLAPSLTQTPVPTESKARVLFGELLASGLVAVDQ
SLKPGSRPVYSLVFPRHKYSGAPATNALEQLLLDASGQSQYVQIKVKELSKVQKAAAPLQ
RFVASGDLDMSTLQVLYETKSSKCAQCGKRFTGDDDGAARKRVHLDWHFRINKRSTNHKA
NIQSRTWYISQDEWVHFDESSLSEQAAAPVARAETAAAAPARAQYVVVPPSETNMNNTCI
VCREQVKATYNDALGEWVWDACVYAPGTKTGRKIAHAACLEETSRKRGPDGLPEAKRVRV
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggtcttttctccgcttgtcgaggactacgcaacgtcgctcaaagagctcacgttcaac
tcgcgtcccatcattgtcaatctcaccaccatcgccaaggaaaataccgatgaggccgat
ggaattctcgccgccattacccatcgcatctaccattgcattcccgaacataagcttttc
gctctttacttgcttgatctgatctgcaaaaccgtcggcgccccctacaatgtgcttatt
ggcgacgacatcttcaagcttttctcgcatgtgtatttgttggtggacacgccgaccagg
gcccgtctagtcaagatgtttgatctgtggcgggtattccgagtcaagggcggcgcgttg
ccccttttccccctggcggaaatggagcgcatcgaagcgtttttgcagcaggctggcttt
cggcgcgcccccgcagggcctacggctgcgctgttggtggcggacatcgacgcgcttttg
cccgccatggagcgccgtctgcgcgcggggggcgaccaggcgcttgcagaacggtgtgcg
gcgcttgccgacttgcgcgccctcttacagagccaggctcttgggcctgcggacttggct
ggggtgctgcagaaattggcgctgatgaaacagcaggagcagaaccaacagaacctcgag
actcaggcccaccagcagctgatgctgcaaaaccagggtctgctgttccagccacaaacg
ccaatcacacagccacagacacccttgccgcaaacgccgtcaacattgccgccaacgcca
cagacgcttccagcacaatctcttgcaccttcgcttacacaaacaccggtcccgaccgag
ctgaaggctcgtgtgcttttcggcgaattacttgcctcaggcttagtggctgtggaccag
tcactcaagccaggctctcggccagtgtactcgcttgtttttccccgccacaagtacctg
ggcgcaccggccaccaatgctcttgagcagctcttgctagatgccagtggccagtctcag
tatgtacagatcaaggtcaaagagctttctaaagtgcaaaaggctgcagctccgctccag
cgctttgttgcttcgggcgaccttgacatgctgaccctccaggtcttatacgagacaaaa
ctgtccaagtgcgcccaatgcggcaagcgctttacgggcgatgacgatggtgccgctcgc
aaacgcgtgcatttggactggcacttccgtattaacaagcgcctgaccaaccacaaggcc
aacattcaatcgcgcacgtggtatatttcacaagacgagtgggtgcattttgacgagtcc
tcactttcggaacaggcggctgcgcctgtggctcgtgctgagactgctgctgctgctcca
gcccgtgctcagtacgttgttgtgcctccgagcgagacaaacatgaacaacacgtgtatt
gtgtgtcgtgagcaggtcaaggcaacatacaatgatgcattaggtgagtgggtatgggac
gcgtgtgtatacgctccgggaacgaagacgggtcggaaaattgcccacgcagcatgtttg
gaggagacgagcaggaagcgtggccctgacggcctaccagaagctaagagggtgcgggtg
tga
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