Clavispora lusitaniae CBS 6936: A9F13_18g00825
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Entry
A9F13_18g00825 CDS
T05147
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9F13_18g00825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_18g00825
03041 Spliceosome [BR:
clus03041
]
A9F13_18g00825
03009 Ribosome biogenesis [BR:
clus03009
]
A9F13_18g00825
03016 Transfer RNA biogenesis [BR:
clus03016
]
A9F13_18g00825
Enzymes [BR:
clus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A9F13_18g00825
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
A9F13_18g00825
Spliceosome [BR:
clus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
A9F13_18g00825
Complex C
U4/U6.U5 tri-SnRNP related factors
A9F13_18g00825
Ribosome biogenesis [BR:
clus03009
]
Eukaryotic type
Pre-60S particles
Helicases
A9F13_18g00825
Transfer RNA biogenesis [BR:
clus03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
A9F13_18g00825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
ATG17_like
Motif
Other DBs
NCBI-ProteinID:
OVF06768
UniProt:
A0AA91T066
LinkDB
All DBs
AA seq
1042 aa
AA seq
DB search
MDGDDLFDVFSEAPASVPEAPKQEKETRKRAASPDPEPTIKKQTTAPAKVVPVVRDASEI
EASREVAPSSGLLAPSENTEKTGLKLKHQVRHQVAIPPDYPYIPIGEHKRKSEARTYPFT
LDPFQDTAISCIDRDESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIKALSNQKY
RELLAEFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD
KSRGVVWEETIILLPDKVHHVFLSATIPNAMEFAEWIVKIHNQPCHVVYTDFRPTPLQHY
LFPAAGDGIHLVVDEMGTFREENFQKAMSSISNNIGDDPAATESRGKKNGQTFKGGNKDG
KSDIYKIVKMIYMKRYNPVIVFSFSKRDCESLALKMSKLDFNNDDERSALTKIFDNAISL
LPEGDRELPQIKNILPLLRRGIGIHHSGLLPILKEIIEILFQEGLLKVLFATETFSIGLN
MPAKTVVFTSVRKWDGKGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG
MVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLESSFYQFQNASAVPVLEQQLQKLTL
EYNSTKVDDEYLVKEYYDLKKQLKTYEEDVRSVVTHPGHILPFLQPGRVIKIRVGEHDYG
WGMVASFSKRTNKRNPSQTYTDHESYVVSVFVCTMFVDSPVGLIKPFNPDLPEGIRPAQE
GEKARAEYIPITLDSIQAISSVRLKIPEDFKSSSAKRSMVRTLKDLPKKLPDGIPLMNPV
DSMKIDDPDFKMLLRKIDVLEGKLASNPLHESDRITDLYAKFSQKMDIDAKIRETKEKIL
QAQAVIQLDDLRHRKRVLRKLAFVTANDIIELKGRVACEISTGDELLLTELIFNGTFNNL
GPEQCAALLSCFVFQERAKEVPRLKPELAEPLKAMQDMATRLAKTYKDCKIEVVEKDYVE
SFRPELMEVTYAWCKGASFTQICKMTDVYEGSLIRTFRRLEEMIRQMEAAAKTIGNVELQ
EKMEKAAELVHRDIVSAGSLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggacggagacgaccttttcgatgtcttttccgaggcaccagccctggtgccggaagct
cctaagcaagaaaaggaaacaagaaaaagagccgcgtcccccgaccccgagcccacgata
aaaaagcaaacgaccgcccccgccaaagtggttccagttgttcgagatgcgtcggaaatc
gaagcgtcgcgagaggtggcgccgtcgagcggattgttggcgccttcagaaaataccgag
aagactgggctcaagttgaagcaccaggtgcgtcaccaggtggccatcccgcctgattac
ccatacattcctattggagaacacaagaggaaaagcgaggccagaacgtatccgttcacg
ttggatccgttccaggatacggccatctcgtgcatcgacagggacgagtctgtgttggtc
tctgcccacacgtcggcaggaaaaaccgtggtggccgaatacgccattgcccagtcgctt
cgagacaagcagagagtcatctacacttcgcccatcaaggcgttgagtaaccagaagtac
agagagcttttggccgagtttggcgatgtcggtttgatgactggagatgtcaccatcaac
ccggatgccggttgtcttgtgatgaccaccgagattttgaggtccatgttgtaccgtggt
tccgaggtgatgcgggaagtggcgtgggtcattttcgacgaggtccattacatgcgagac
aagtccagaggtgttgtgtgggaagagaccatcatcttgctcccagataaggtgcaccat
gtctttttgtcggcgactattcccaacgcgatggagtttgccgagtggattgtgaaaatc
cacaaccagccgtgtcacgttgtgtacacggatttccggcccacaccgttgcagcactat
ttgttcccagctgcgggagacggaatccacttggtggttgacgaaatgggcactttccgt
gaagaaaactttcaaaaggccatgtcgtctatttccaacaatatcggtgacgatccagca
gcgacagagctgcggggaaagaaaaacggccagactttcaaaggaggcaacaaggacggc
aaaagtgacatttataaaatcgtcaagatgatctacatgaagagatacaacccagtgatt
gtgttctcgttttccaagcgtgactgcgagtcgcttgccctcaaaatgtccaaattggac
ttcaacaacgacgacgagcgcagtgcgcttactaagatcttcgacaatgccatcagcttg
cttccggagggggatcgcgaactccctcaaatcaagaacatcttgccattgttgcgccgt
ggtatcggcattcatcactcgggtctcttgcctattctcaaggagatcatcgagattttg
ttccaagagggtcttctcaaggttcttttcgccacagaaacattttccatcggtctcaac
atgcctgctaagactgtcgtgttcacttctgtgcgtaaatgggacggcaaagggttccgt
tgggtttccggtggtgagtacattcaaatgtctggacgtgctggtcggagaggtttggat
gaccgtggaattgtcattatgatgatcgacgagaaaatggagccgcaggtggccaagggc
atggtcaagggccaggctgaccgcttggactcggcgtttcacttgggctacaacatgatt
ttgaacttgatgcgtgtggagggtatttcgcccgagtttatgttggaaagctcgttctac
cagttccagaatgcctctgctgtgccggtgttggaacagcagctccagaaattgactttg
gaatacaacagcaccaaggttgacgacgagtaccttgtgaaggagtactacgacttgaag
aagcagttgaagacatatgaagaagatgtgcggctggtggtgacccatccaggtcacatc
ttgcccttcttgcaaccgggccgtgtgattaaaatccgtgttggagagcacgattatggt
tggggtatggtggcttcgttctcgaagagaacaaacaaaagaaacccatcgcagacgtat
acggatcacgaatcgtacgttgtgagtgttttcgtatgcacgatgtttgtggattcgcct
gtggggttgatcaagccgttcaatcctgatcttcctgagggaatccgcccagcccaagaa
ggtgagaaggctagggccgaatacatccccatcacattggactccattcaagcgatctca
agcgtgcggttgaaaatccctgaagactttaagagctcgctggcaaagcgcagcatggtg
cggaccttgaaagatttgcccaagaaattgccagatggaattccgttgatgaaccccgtc
gacagcatgaaaatcgacgatccagacttcaaaatgctcttgcgcaagatcgacgtgttg
gaaggaaaattggctagcaacccattgcatgagtcggaccgcattaccgacttgtacgcc
aagttttcgcagaagatggatattgacgccaaaatcagagaaaccaaagagaagattctc
caggcgcaggcggtgatccagcttgacgatttgcgtcaccgcaaacgtgtcttgcgtaag
cttgcgtttgttacggcaaacgacattatcgagttgaagggccgtgttgcatgcgagatc
tctacaggcgatgagctcttgctcacggagctcatcttcaacggtacattcaacaacttg
ggccctgaacaatgcgcagcgctcttgtcgtgctttgttttccaagaacgggcgaaagag
gtgccgcgcctcaagcctgagttggcggaacctttgaaggcaatgcaagacatggccaca
cgcttggcgaaaacatataaggattgcaagatcgaagtagtggagaaggactatgtggag
ctgttccggcccgagcttatggaagtgacatatgcctggtgtaaaggtgccagctttaca
caaatttgcaaaatgaccgatgtatatgaaggttcgctcatcagaaccttcagaagattg
gaggagatgatccgccagatggaggctgcggccaagacaattggaaacgtcgagttgcag
gagaagatggagaaagccgctgagttggtgcacagagacattgtttctgctggctcgttg
tacttatag
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