Clavispora lusitaniae CBS 6936: A9F13_23g00242
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Entry
A9F13_23g00242 CDS
T05147
Name
(GenBank) putative nonsense-mediated mRNA decay protein
KO
K14327
regulator of nonsense transcripts 2
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03013
Nucleocytoplasmic transport
clus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
A9F13_23g00242
03015 mRNA surveillance pathway
A9F13_23g00242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clus03019
]
A9F13_23g00242
Messenger RNA biogenesis [BR:
clus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
A9F13_23g00242
mRNA cycle factors
P-body specific factors
A9F13_23g00242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Nop14
CDC45
Motif
Other DBs
NCBI-ProteinID:
OVF05418
UniProt:
A0AA91PWG7
LinkDB
All DBs
AA seq
1015 aa
AA seq
DB search
MDPTEQTLQLREKNESAWRGDVFVPPGKLDSSLKKNTGFIKKVRTSLNAQNYVSVLKDIG
SLSLEKYVSEVASAVVEGVSKLSKTEDFQASVAVISALHQRVPVSFTPQFLSAIVNGEMN
KDTETSLATSRSSLRLLMELSFVGIGTQFSQCDKSLLGPQASKFCTRYETQPIVLPLLKH
FMSYRFEDGFALPVVVSLSKRYGDILKSPNDMISEDARAEILQTFTVYTKRSKELFTSLH
SQVARLTQKDFKASIRTGRILDENQADLRQKTELEKVFASNMAPLCEIFNVEYPSFEPAE
NEKASEVVVKPSKVVGWWEDAREKSFYTEFSSYEELCKTFDASAIPSKKYAALTEGEKVA
LFVQHLSEASSEEDVDRLTVEFHSMVPYNKATRNRLLRFFSEIRKSDNFNIYARFLKINA
DVFPELLTELVEILDRGFRTQIHHGAINFRNLTFFIELVKFKLVPLHMVFHKVRRMTMDI
GQTGNVDVLSVFYERCGKFLLFEPEYSATATEMIALLKEQSKSDKLSVNQKLALRNMSLI
VDSFTSVKEIEPEVKMDLMYEFVTQVLRKLIVSNDLTYVLELLSKINFAKDENAQHAFLS
VYAKPELMVSDKLELMAELLRRLDKKNAFLITMVVDNLTEGVIRCMERNDYRQNVTRIAH
MKLVAALFNRKVLSFKSVIDLLFKIVCFDYPNNLPLPGSSMGSDLPDDYIRINLVCALLN
SIEIRKVAKEKLLEKGVKTLEGFMIFFSYYICCKQHPLPMNVRFNIDDLFRKFNLVASRP
LDKPTDVRSAMVALQKYSTAENQIVESSLAETETSEDESSDESDFLAKAIDIGSGNNQGS
EAENSDKESDGDDFDDDDDEEEDDDDDEDVESDDEDDDEDNDTDTGSSEDSDSEYLSDSQ
LEDELEEERSRAQHQLELAELERKEAQNMDNAIKEIINKTTQNVRSTTTFKVPAPSSLLG
NDTARKGNFTFLSKSNKVRDLAMPSDNQFAERIAREQQAQRANREKIMSLLTMQE
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggacccaaccgagcaaacgctccagctccgagaaaaaaacgaaagtgcctggcggggc
gacgttttcgttccgccggggaagttggactcgtctttgaagaaaaacaccggcttcatc
aagaaagtccgaacctcactcaatgcgcaaaactatgtgagcgtgttgaaagatatcggc
tccttgagcttggagaaatacgtcagtgaggttgcctctgctgtggtggaaggcgtgagc
aaattatcgaaaacagaggacttccaggcgtctgtggcggtgatatcggcgcttcaccag
cgggttccggtttctttcactccgcagtttctttcggccattgtcaatggcgaaatgaac
aaagacaccgagacaagtcttgccacgctgcggctgctgctccggctcttgatggagttg
ctgtttgttggcattggaactcagttttcccaatgcgataagtctcttttgggcccacag
gcgagtaaattttgcaccaggtacgaaactcagccgattgttcttcctttgctaaagcac
ttcatgtcttaccgctttgaagacggctttgcgttgcctgtcgtggtgtcgctctcgaag
agatatggcgacatactcaaaagtccaaatgacatgatctcagaagacgcccgtgccgag
atcttgcaaacattcacagtctacacgaaaaggtcgaaggaactctttacttccttgcac
tcgcaagtggcacggctcacgcaaaaggacttcaaagcgtccatcagaacgggcagaatt
ctcgacgaaaaccaggcagacttgcgccaaaagacagagctcgaaaaggttttcgcatcg
aatatggctcccttgtgtgagattttcaacgtggagtatccatcttttgagcccgccgaa
aacgaaaaggcttcagaagttgtagtcaaacccagcaaagtcgtaggttggtgggaagat
gctcgagaaaaaagcttctacacggaattctcctcttacgaagaactttgcaagacgttc
gatgcgtcggctattccttcaaagaaatacgcagcactcacagaaggagaaaaagtggcc
ttatttgttcagcacttgagcgaagcttcgtcggaagaagatgtcgaccgcttgactgtg
gagttccacagtatggttccatacaacaaagccacgcgtaaccgtctccttcgttttttc
ctggagatccgcaaaagcgacaactttaacatttacgctcggttcctcaagatcaatgcc
gatgttttccctgaacttctaacagaattggtggaaattcttgatcgcggattcaggacc
cagatccatcatggtgcaataaatttcaggaatctcacgtttttcatcgaattagtgaag
ttcaagcttgtaccgcttcatatggtcttccacaaagtgagacgtatgacgatggatatt
ggacaaacgggaaacgttgatgttcttctggtattctacgagcggtgtggcaagtttctt
ttattcgaaccagaatacagcgctacagcaacagaaatgattgcgttattgaaggaacaa
tcgaaaagcgataagctctcggtcaaccaaaagctagcgcttcgaaacatgtcgttaatc
gtcgattccttcactctggtgaaagaaattgagcccgaagtgaaaatggatctcatgtac
gaatttgtcacccaagtgctacgaaaattgattgtgtcaaacgatcttacgtatgtgttg
gaactcttatccaaaatcaattttgccaaggatgaaaatgcccaacatgcatttttatcc
gtttatgcaaaaccagaacttatggttctggataaattggaattgatggctgagctcttg
cgacgtctcgataagaaaaatgcgtttttgattacaatggtggttgacaatttgacggaa
ggtgttattcgatgtatggaacgcaacgactatcgccagaatgttacaagaatagcacac
atgaaacttgttgcggcgctattcaatcgcaaagtattgtccttcaaaagcgtaatagac
cttttattcaagattgtctgttttgactatcctaacaacctcccacttccaggatcactg
atgggcagtgatttgcctgacgactatatccgaatcaatttggtgtgtgcattgttgaat
tctattgagatacgtaaagtggctaaagaaaagcttcttgagaaaggcgtcaaaaccctt
gaagggttcatgattttcttcagctattacatctgctgcaagcaacacccattgcccatg
aatgtgcgcttcaacatcgatgatttattccgcaagttcaatcttgtcgcatcaagacct
cttgacaagccaacagacgtccggtcggccatggtagcacttcaaaagtacagcactgct
gaaaatcagattgttgaactgagtttagccgagacagagaccagcgaagacgaaagcagc
gatgagtcggactttttggccaaggctattgacatcggaagcggcaacaaccagggatca
gaagcagaaaatagcgacaaagagagtgatggcgatgacttcgatgatgatgatgatgaa
gaagaagatgatgatgacgatgaagacgttgaaagtgacgatgaagacgatgatgaagat
aacgatactgacacgggcagtagcgaggacagtgatagcgaatatcttctggatagccaa
ctagaagacgagctagaggaagaaagatcccgagcacaacatcagttggagctagcagag
ctcgaacggaaggaggcgcagaacatggacaacgcaatcaaagaaatcatcaacaaaacc
acacagaacgttcggagcacaactactttcaaggtccctgctccgtcgctgcttttgggc
aacgacacggcacgcaagggtaatttcacgtttctctccaagtccaacaaggttcgtgac
ttggccatgccgtcggacaatcagtttgctgagcgcatagcacgcgaacagcaggcccag
cgggccaacagagagaagatcatgagtttattgacgatgcaagagtaa
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