Columba livia (rock pigeon): 102084039
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Entry
102084039 CDS
T02912
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
102084039 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
clv01001
]
102084039 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
clv04054
]
102084039 (CIITA)
Enzymes [BR:
clv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102084039 (CIITA)
Protein kinases [BR:
clv01001
]
Serine/threonine kinases: Other
TAF1 family
102084039 (CIITA)
Pattern recognition receptors [BR:
clv04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102084039 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
LRR_9
UreE_C
Motif
Other DBs
NCBI-GeneID:
102084039
NCBI-ProteinID:
XP_005508567
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MKAMFRFCSDILLTSSDAAMNLFKEILPRVRKILSAATASDEHALLNFMLKEDVISKEYH
QALLHEEDREDLARKISLTFVEKWDLYLTNLVPLCCLNLCGSKPQNVTDNEPTGSKYISD
SKGQIMDSALLSENGYLDLLHSDIDLLHLYAVLDPKSSGNEDDVFSADPEVDASNNDQVN
NMDFPYTLENGENGDEFYHCSNTRDAYARIAELAEYVLKDHQEKLIEDAFAGNLIWDEIT
AENTEKFTDIKMQKCHKRPFLGSAESCSEASEPKYKKIVEGPAVPAGNGGFLTMPLNSQP
ASSASLTNQYMSFSVPAANKPKAFKXXXXXXPLIPECLPVSTEGSQEDTDFADPPQQILN
FVLESGTSDVIIYPVLTSSMETLVSPSFPVSLCGLEMFKEVRVPLIPSEEPLKRPKPVED
FCASLMEYFRDVCKSVAMEREVALDHLFIDGTLVQSQTETKTGKNSIKAMEKELVTCSLQ
GKEKAALTRSQIFQIPGGKDLETKVIXCQDWSSGELSQFEFVFWFDCKQISVPEKRYSLK
DLLLDFFVKPQEGSKEIFEYILQNPAKVLLVFDGFEGLHDHENFPRCSASHPETALCSVK
ELLSGLIQKKILNGCTLLLTARPKDKVYQFVSKVDKTIELVGFSPQQRELYITKYFEGLP
YRDNALNLIKEREYLFSHCYSPVMCRFVCFLCETVLETGDKNLPSTLTTVFLKFVQQKMM
PMQTDVTALQNQESLATLARLAWHLGEKHQSALKSDLLPSKEVKEFALKHGFFLPFAFPN
HSDTGEEEFGNTFSDFVIQNFLGALHLILAEEIKDKSLTKYLSFPSKKKKPYNWLDLVPR
FLAGLLFLQDDPCYCCLSNKDVKQSTKKQKTLLKYIKRLQINELCPERLLELFHCIYETQ
SSYLFQHVALRLKPDLSFLGVVLTPPDVHVLHSVLKRSRKEFSLDLRNSSIDIQGLKDLI
GLTNVASFRASLSDTLRLWKSLEQTKDYELLKASTEKFVLDPFKAKTMKDISDLSDLVEI
QDKMINCVQDACGCSSYEIPAIKNLRKLEFALGPVCGLQGFLKLVEILAAFPSLQHLDLD
ALSENGIGDEGAKSLSEVFPTLKSLETLNLSQNKITDVGAEKLATALPSLLSLKTLSLYN
NSICDFGAENLAKVLPAMASLRVLEVQYNKITGVGAQQLTDSLRKCPHIKNLVMWNPTIP
YGVLEHLQQLDSRISV
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccatgttcagattttgctcagacatccttctaacgtcttcagatgcagctatg
aatctctttaaggagatcctgcctagagtaaggaagattctttcagctgctacagcttct
gatgagcacgcattgcttaacttcatgctgaaagaagatgtgatatccaaggagtaccat
caagccttgctccacgaagaagacagagaggacctcgcgaggaagatatctctgacattt
gtggaaaaatgggacctctacttgaccaatttggttcccctgtgttgtttaaacctctgt
ggcagtaagcctcaaaacgtgacagataatgagccaacaggaagcaagtacatttctgac
agcaagggacaaatcatggattcagcacttctgtctgagaatggctatcttgatttgctg
cacagtgacattgatctgttgcatctgtatgctgtccttgatccaaagtcatctggaaac
gaagatgatgtcttctctgcagatcctgaagttgatgccagcaataacgatcaggtcaat
aatatggatttcccatatacactggaaaatggtgaaaatggggatgaattctatcactgt
tccaacaccagagatgcttacgcaagaatagctgaattagcagaatatgtgctcaaagat
catcaggagaagctgatagaagatgcctttgcagggaaccttatttgggatgaaataact
gctgaaaacactgagaaatttactgacataaagatgcagaaatgtcacaaacgacccttc
ttaggctctgcagagagttgctctgaagcctcagaacccaaatacaagaaaattgtggaa
ggacctgcagtgcctgcagggaatggcggtttcttaactatgcctctcaacagccagcca
gccagctccgcctcactaactaaccagtacatgtccttttctgttcctgctgccaataaa
cccaaagcctttaaaaannnnnnnnnnnnnncacctttgattccagagtgtctacctgtc
agcacggaagggagccaagaggacacagactttgcagatcctcctcagcagatacttaac
tttgttcttgaaagtggcacatctgatgttataatatatccagtgctgacttcttccatg
gaaacgctggtatccccaagttttccagttagcttatgtggtttggaaatgttcaaagaa
gtccgagttcccctaattccttctgaagaacctctcaaaagaccaaagccagtggaagat
ttctgtgcatcacttatggaatatttccgagatgtgtgcaagtctgtggccatggagcgt
gaagtagctcttgatcacctgtttattgatgggacacttgttcagagccaaactgaaacc
aagactgggaagaacagcataaaagcaatggaaaaggagctggtaacttgcagtctgcaa
gggaaggaaaaagcagctcttacaagaagccaaatatttcagatcccaggaggtaaagac
ttagagactaaagtgattngctgccaggactggtccagtggagagctttctcagtttgaa
tttgtattttggtttgactgcaaacaaataagcgtgcctgagaagcgatacagcttgaag
gatctgctgcttgatttttttgtaaaacctcaagagggaagcaaagagatcttcgagtac
atattgcaaaatcctgctaaagtcctcctggtttttgatggatttgaagggttgcatgat
catgagaattttccccgttgctcagccagccatcctgaaacagccttgtgcagcgtcaag
gagctgctttcaggactcatccaaaagaagatcctcaatggttgtactttattacttaca
gcaagaccaaaagacaaggtgtaccagtttgtgtccaaagtggataagaccattgaattg
gtaggattttcccctcagcagagggaattgtacataaccaaatactttgaaggattaccc
taccgtgataatgcactgaacttaatcaaggagcgtgagtacctgttcagtcattgttac
agccctgttatgtgcagatttgtttgttttctgtgtgagacagtacttgaaactggagac
aaaaaccttccttcaactcttactacagtcttcctgaaatttgtccagcaaaagatgatg
cctatgcaaacagatgttacggccctgcaaaatcaagagagtcttgctacactagcccgt
ctagcctggcaccttggagaaaagcaccaaagtgccttgaaaagtgatcttcttccttct
aaggaagttaaagagtttgctctgaaacatggatttttcctgccatttgcattccccaac
cattcagatactggagaagaggaatttgggaacacattctctgattttgtcattcagaat
ttcttgggtgcgcttcaccttatattagcagaagagatcaaggataaaagtctaacaaag
tacctgtcttttccatccaagaagaaaaaaccttataactggttagatttagtgcctcga
tttttggctggactgttgttcctccaggatgacccctgctactgctgcctttcaaataaa
gatgtaaaacaatcaaccaagaagcagaaaacactcttgaagtatattaaaaggctgcag
ataaatgagctctgtccagagaggttacttgagctcttccattgtatttatgaaacacaa
agcagttatctttttcagcatgtggccttaaggctcaagccagacctgtcttttctgggc
gtagttcttactccacctgatgtccatgtactgcactctgttttaaaaaggtcaagaaaa
gagttttccttggatttgcgaaacagcagcattgacatacaagggctgaaagacttgatt
ggcctaacgaatgtggcatcgttcagggcctccctcagtgataccctcaggctctggaaa
tctttagaacagacaaaagactatgaactgctgaaagcatcaacagagaagtttgttctt
gatccctttaaggcaaagacaatgaaggacatcagtgacctttcagacctggtagagata
caggacaagatgatcaattgtgtgcaagatgcatgtggttgcagcagctatgaaattcct
gccatcaaaaacctcagaaaactagaatttgcgctgggtccagtatgtggcctacaggga
ttcctaaaactcgtggaaattcttgcagcatttccatcacttcagcatttagaccttgat
gctctgagtgaaaatggcataggagatgaaggagcaaagagtctatctgaagtctttcca
accctgaaatcactggaaacattaaacttatcacagaataagataacagatgtgggtgcg
gagaaactagctacagctcttccttcgttgttgtcattaaagacactaagcttgtacaat
aatagcatttgtgattttggagcagaaaatcttgcaaaagttcttcctgcgatggcatct
ctaagagtgctggaggttcagtataacaaaatcactggtgttggagcccagcagctgact
gacagcctgcgcaaatgtccccatataaagaacttggtgatgtggaatcccaccattccc
tatggagttctcgaacacctgcagcagctggactctaggatcagtgtgtag
DBGET
integrated database retrieval system
