Columba livia (rock pigeon): 102085108
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Entry
102085108 CDS
T02912
Symbol
POLR1A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102085108 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clv03021
]
102085108 (POLR1A)
Enzymes [BR:
clv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102085108 (POLR1A)
Transcription machinery [BR:
clv03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
102085108 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
102085108
NCBI-ProteinID:
XP_005510005
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNMGNPALNGLYDLALGPPDS
KEVCATCIQNFSNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLL
LSQLKVLEKGLLHAVHELEVILNRFLEQCADATGAEIEEELNNHVQEILQNYEVADQCSN
VKNVCECRNKLIAQFWKVHTSSKRCPNCKARRSLVRKEHNSKLTVTYPSAVYHKAGGEGV
LDEPAAIDESQLGKRGYLTPMAAKEYILALWKNEGFFLRYLFPGMNPHENSEFSPDVFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDAQIIRKLLVFMAKEEGQPIKITEEI
QTETEEYNAPLDHSVLTMIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLMTEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVVNEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQTGLKIVCR
HIKNGDVLLLXXXXPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYR
GLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPEDHVPLNLSGKAKIGGRAWVKG
PANRCLSLDSMCESQVIIRNGELLCGVLDKAHFGSSAYGLVHCCYEIYGGKTSGKVLTCL
GRLFTAYLQLYRGFTMGIEDILVKPKADHKRQKIIEKSKKGGIEAVRAALNLPETASCEE
VQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYSNEVNKVCMPLGLHRSFPENNLQLMVQSG
AKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKP
SEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGE
DGLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALTRMESRQANQQFKAIKKWRARHQN
SVQREGGFLLFAQKKMASVKAQTPEGEVKYGRDAATLQLLKMWYELDEKKRRKYLKKANK
CPDPSLGVWRPDTYFASVSETFENGVEAYINRWESENRQGYTCPTLSSDRLKDLLYLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT
PTMSVPVFNTKKALKKVKQLKKQLTRVCLAEVLQKIEIEESLRVKCKQNKHRLYKIRFHF
LPREYYQEEKCVKPRDILHFMETRFFKIFLEAIKRKSAKMASFTEVSARKATRKDLDGDQ
DKIQDSQEAPAEEEEVIVDAEADEGDGDATEAKRRKNQEEEVDYESEEENGEEDVGENVE
DEEADSEKEEGTPSAEGDKKEADGDGSQNLSFVSQTKKDRLLQSADVRINAVLDSHPSIQ
DYLFDTENELWCEVSLTLPLMKVYFDVSSLLVSVARNTVIHEVKGITRCLLNESTNKHGE
KELVLHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVIIKEIKDVFAVYG
IEVDPRHLSLVADYMCFEGFYKPLNRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDEL
RSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgccgaaagtggtgccgtggcggcggctggttggggtctccttcgggatgtac
acggccgaggagatcaggaaactgagtgtaaaacccataacaaatcctcagtatttggat
aacatggggaatccagcccttaatggactgtacgacttggctttgggacctccagactcc
aaagaagtgtgtgcgacttgcatacagaacttcagcaactgccccggtcattttggccat
atagaactgcctctgcctgtctacaaccctctgttttttgataaattataccttctaatt
cgaggttcttgtttaaattgtcacatgctgacgtgtactcgagctgtggttcacttactg
ctgagtcagctgaaggttctggagaaagggttgctacatgctgtccatgagctcgaagtc
attctgaacaggtttttagagcaatgtgcagacgcaacaggcgcagaaattgaagaagag
ttgaataaccacgttcaggaaatattacagaattatgaagtagcagatcagtgttcaaat
gtcaaaaatgtatgcgagtgtagaaataaactgatagcacagttctggaaagtccatacg
agttcaaagagatgcccgaactgcaaagccaggagatcactagtgcgaaaagaacataat
agcaagctgacagtaacttatccttctgcagtgtaccataaggcaggaggggaaggcgtt
ctggatgagccagcagctattgatgaaagccagttagggaagagaggatacctgacaccg
atggctgccaaggaatacatcttggctctgtggaagaatgaaggtttctttttgcgttat
ctcttccctgggatgaatccccatgagaattcagaattcagcccagacgtgtttttttta
gatctgcttgtggttccaccttcgaggtatcgtcccgtaaatcgtgttggagaccgactg
tttacgaacggtcagaccgtgaacctgcaggctgtcatgaaagatgcccaaataatccgg
aagctcttggttttcatggcaaaagaagaaggtcagccaataaaaattacagaagaaatc
caaacggagacggaagagtataatgcacctctggaccattctgtcctgacaatgattccg
ggacagagtattgcagataagttgtacaacgcttggattcgtctccagagccacgtcaac
attgtatttgatagtgacatggacaaattaatgacagaaaaataccctggtattcgtcag
ctattagagaaaaaggaaggactgttccgcaagcacatgatgggaaagcgtgtggatttt
gccgctcgatcagtcatttgccctgatatgtacattggtacgaatgagattggcattcct
atggtatttgcgaccaaactgacttaccctcagccggtcactccctggaatgtcaaagag
ctgaggcaggcggtcatcaacggccccaaggttcacccaggggcctccatggtggtcaac
gaagatggatctcggacagtgttgagcgccagcagcctgacccagcgcgaggccatcgcc
aagcagctcctcaccccttcgtcaggagcgccccagacaggactgaagattgtatgtcga
cacattaaaaacggagatgtccttttgctgnnnnnnnnnnngcccactcttcacagaccc
tccatccaagctcaccgggcccgaatcctgcctggagaaaaagtgctgaggcttcactac
gcaaactgcaaggcttacaacgcagattttgatggcgatgaaatgaatgcgcattttcca
cagagcgagctgggtagagcagaagcctacaccttggcctttactgatgagcagtatctt
gttccaaaggatgggaaaccacttcccggcttgatccaggatcacatgatttctggagtc
agcatgacaatccggggctgctttttcaccagggagcaatatatggagctcgtttaccga
ggactaacagacaaaaaaggaagaattaaaacctttcctcctgccattatgaaaccgcag
cgattatggacaggaaagcaggttgtttctaccttgttaataaacatcattccagaagat
catgtcccactgaatttgtctgggaaagccaagattggtggaagagcctgggtgaaggga
cctgcaaacagatgtctcagtctggattccatgtgtgaatctcaggttattattagaaat
ggggaattattgtgtggagttttggacaaagctcactttggcagctctgcctatggcctg
gtccactgttgttatgaaatctatgggggtaaaaccagtgggaaggtgctaacgtgtctg
ggacgcctcttcactgcttatctgcagctctacaggggatttacaatggggatcgaagat
attttggttaaacctaaagcagaccacaaaagacagaaaatcattgaaaagtcaaaaaaa
ggtggtattgaagctgttagagctgctcttaatttgccagaaacagcatcctgtgaggag
gtgcaagggaaatggcaggatgcccatctctgcaaagaccagagggattttaacatggtt
gatctgaaattcaaggaggaagtaaacaattacagcaatgaagttaacaaggtttgtatg
cccctcggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcagga
gccaaaggatccactgtaaatacaatgcagatttcttgtttgctgggccagatagagctg
gaaggtcgaaggcccccactgatggcatctggcaaatcgctgccatgtttccagccttac
gatttttcccctagctcgggaggatttgtgacgggcagatttctcactgggatcaaacct
tctgaattcttctttcactgcatggctggcagggaaggtctcgtggatacagctgtcaaa
accagccgttccgggtacctacaaagatgtgtcataaaacatttggaaggactggtagtt
cagtacgacctgactgtacgagatagcgatggcagtgtggtgcagtttctgtacggagaa
gatgggctcgatatccctaaaactcagttcttgcaacccgaacagtttcctttcattgca
gaaaactacgaggtaatccagaagacaaatcatctggatgaagctttaacaaggatggag
tctcgccaagccaaccagcagttcaaagccatcaaaaagtggcgagccaggcaccaaaac
tctgtacaaagagaaggaggttttctgctgtttgcccaaaagaaaatggcaagtgttaaa
gcacagactccagaaggagaagtcaaatatggaagagatgctgccacattgcagttactg
aagatgtggtatgaactagacgagaagaagcgaagaaagtatctgaagaaggcaaataag
tgtcctgacccaagccttggtgtttggcgtccagatacttattttgcatctgtttcagaa
acatttgaaaatggagttgaagcttatatcaacagatgggaatctgagaacagacaaggt
tacacgtgtccaacactttcttctgatagattaaaggatctgttgtacctgaagtggcag
cgatctctttgtgacccaggagaagctgtgggtcttcttgcagctcagagtattggggaa
ccttccacacagatgactctgaacaccttccactttgctggcagaggtgaaatgaatgtc
acgttgggtattccgaggttgcgggaaatactgatggtggccagtgcaaatattaaaacg
ccaacaatgagtgttcctgtgttcaataccaagaaagctctcaagaaggtgaaacagctt
aagaagcagctcacaagagtgtgcttagctgaggtgttgcagaaaattgagattgaggaa
tccctgcgtgtgaagtgcaagcagaacaaacatcgcctctacaaaatcagattccatttc
ttgccccgtgaatattaccaagaggagaagtgtgtgaagcccagggacatcttgcacttc
atggaaacaaggttctttaagatttttctggaagcaattaaaaggaagagtgcaaagatg
gcatcttttactgaagtcagcgcccggaaagccactcggaaagatttagatggggaccaa
gacaagatacaggacagtcaagaagctccagcagaggaagaagaggtcattgttgatgca
gaagctgatgaaggggatggggatgccacagaagcaaaacggaggaagaaccaggaagaa
gaggttgattatgagagtgaagaagaaaacggggaagaagacgttggtgagaatgtagaa
gatgaagaggccgactcggaaaaagaagaagggactcccagtgctgaaggagataagaaa
gaagcagatggtgatggttctcaaaatctttcctttgtgtctcaaactaaaaaagatcga
ttacttcagtcagcagacgtgcgaataaatgccgttctggacagccacccatcgatacag
gattacctgtttgacaccgaaaatgagctttggtgtgaggtttcactgacacttccacta
atgaaagtgtatttcgacgtctcctccttgcttgtctctgtcgcgcgaaacaccgtcatc
catgaagtgaagggaatcacacggtgcttgttgaatgaaagtaccaacaagcacggagaa
aaggaacttgttctgcataccgaagggataaaccttgcagagctgttcagatactctgat
attctggacctgaacagactttattccaatgatattcatgccatggctaagaattatggt
attgagtctgccctgagggtgattataaaggaaataaaagatgtatttgctgtatatggc
attgaggtggaccctcggcacctttcactggtggcggattacatgtgtttcgaaggattt
tataaaccgctgaatcgttttggaattcagtccaattcctcccccctgcaacagatgacg
tttgaaacgagctacaaattcttgaaggaagcaacaatgatgggtgcccacgatgagctg
cgatccccttctgcatgccttgtggtcggaaaagttgtgaaaggagggaccggtttgttt
gacctcaagcaaccccttacgtag
DBGET
integrated database retrieval system
