KEGG   Columba livia (rock pigeon): 102085406
Entry
102085406         CDS       T02912                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
clv  Columba livia (rock pigeon)
Pathway
clv03082  ATP-dependent chromatin remodeling
clv03083  Polycomb repressive complex
clv04110  Cell cycle
clv04330  Notch signaling pathway
clv04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:clv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102085406 (HDAC1)
   03083 Polycomb repressive complex
    102085406 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    102085406 (HDAC1)
   04350 TGF-beta signaling pathway
    102085406 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    102085406 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:clv03036]
    102085406 (HDAC1)
Enzymes [BR:clv01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102085406 (HDAC1)
Chromosome and associated proteins [BR:clv03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     102085406 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     102085406 (HDAC1)
    BRAF-HDAC complex
     102085406 (HDAC1)
    REST complex
     102085406 (HDAC1)
    SHIP complex
     102085406 (HDAC1)
    MiDAC complex
     102085406 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     102085406 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102085406 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    102085406 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 102085406
NCBI-ProteinID: XP_005509669
UniProt: A0A2I0LNG3
LinkDB
Position
Unknown
AA seq 451 aa
MKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSK
QMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASG
FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGD
RLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELP
YNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAV
QEDSGDEEEEDPEKRISIRNSDKRISCDEEFSDSEDEGEGGRKNVANFKKAKRVKTEEEK
EEEEKKDEKEEEKPKEEKAEPKGVKEETKST
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgaaacctcacaggatccggatgacccacaacctgctgctgaactacggcctctacagg
aagatggagatatatcgccctcacaaggcaaacgcagaagaaatgaccaagtaccacagt
gacgactacataaaatttctgaggtctattcgcccagataacatgtctgagtacagcaag
cagatgcagagatttaacgttggggaagactgccctgtgtttgatgggttgtttgagttc
tgccagctctctgctgggggctccgttgccagtgctgtgaagctgaacaagcaacagacg
gatattgctgtgaattgggcggggggccttcaccacgctaaaaaatcagaagcttctggc
ttctgttatgtcaacgatatcgtcttggctatcttggagctcctaaagtatcaccagaga
gtgctgtacatcgacattgatattcaccacggagacggcgtggaggaggctttttatacc
acggaccgcgtcatgaccgtgtccttccataagtacggggaatacttcccaggaacaggg
gacctacgggatattggtgcaggcaaaggcaagtactatgctgtcaactatcccctccgg
gacggaatcgatgatgagtcctacgaagcgatattcaagccggtgatatccaaagtgatg
gagacgttccagcctagcgcagttgtcttgcagtgcgggtcggactctctgtcaggtgac
aggctgggttgttttaatctgaccatcaaaggtcatgctaagtgtgtggagtttgtaaaa
agttttaatttgcctatgctgatgctgggaggaggtggctacacgatccgcaacgtggct
agatgctggacctatgagactgccgtggctttggacactgaaattcccaatgagcttcca
tataatgactattttgagtactttggcccggactttaagcttcacatcagtccctcgaac
atgactaaccagaacaccaatgagtacctcgagaagattaagcaacgtctgtttgagaac
ctgcgcatgctgccgcacgcccctggggtccagatgcagccgattcccgaggacgcagtt
caggaagacagcggagatgaagaggaagaagatcctgagaagcgcatttcaatccgcaat
tctgataagagaatatcctgtgatgaagaattctccgactccgaagacgaaggggaagga
gggcgcaaaaacgtcgccaactttaagaaagctaaacgtgtgaagacagaagaggagaag
gaggaggaggagaagaaagatgagaaagaagaggaaaaaccaaaagaggagaaagcagaa
cccaaaggggtgaaggaagagacaaaatccacctaa

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