Columba livia (rock pigeon): 102085739
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Entry
102085739 CDS
T02912
Symbol
CSPG4
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
clv00535
]
102085739 (CSPG4)
04091 Lectins [BR:
clv04091
]
102085739 (CSPG4)
Proteoglycans [BR:
clv00535
]
Cell surface proteoglycans
Others
102085739 (CSPG4)
Lectins [BR:
clv04091
]
C-Type lectins
Others
102085739 (CSPG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
102085739
NCBI-ProteinID:
XP_013227644
LinkDB
All DBs
Position
Unknown
AA seq
2358 aa
AA seq
DB search
MGTQGGIATLLLLLLLACQPQPLRAGPLAGASFFGDGYVEMPLADSSRTVRLQLRLYTSQ
GNGLLFLAAGQPDHLLLQLRASRLQARLRLGSEEVTLYSPEDLQFNNLAVHDVELLVEDG
RMTLTIDSHINSSVDIPGPVRELDIQYGLYAGGTGRLDAPLPLPYLAEASSPFRGCLHLV
TFNGLDVLSRLSSDGSSKIFHRVQEGCSTQFSADPEDPFGFLGPHSYIAFPTWDASEEAT
IEFVITTSITQAPLIYHAGLENDFFYLEISNGRLRGFVEKGNGIIILHNNVFISDEQQHY
VKVYTDIHKFEILIDYYASSTSNRGINNYLDLQGNLFIGGMNEKALQRLREHHLAFISVW
TMTNNSFVGCLEDLRINQQRRSLQDAVITKDITSGCGKQDHYWDYDEVYEQDEAPTSPPP
DVWSGAPGLVVEPCRPDNSFPPAFANISRLLHVSPLIVSEGGMAYLEWKHAQPTVDLSLA
NIRQSQILFSITNDPRHGQLELDIPGSRSRRKFTLLDIVNRKVRYVHDGSEGPMDQLMLE
VTVTAQQGVPECLRQGQMYLLPIMINPINDAPQVIFPHGNHMTILKHTRKHLTTDILQVL
DDDTSCDDLEFQLHGGQQMEEGYVEYDFHPGVPIEEFSCRDLEAGNVVYVHQSGTNSQLT
LQVSDGTIPSPIATLRILAIDPDIHLHNNTGLSISQGEAARITTANLSVETNAVKQRVAI
LYVLREPLRYGEIQKQVSMGGEWKKVESFHQQDLEQGRIQYFSTDPEYRLEDVVEKLTFE
VQVGQKVLQDNTFFIRIKRATIKMKTMVPLQMKNRRHRNITSKELEAMLEDPNAAPVPFR
YLVIQAPKKGNLELLGNRLTEGFGFTQDDLQKNHLSYSATIRNSQQAQDTFQFRVHAGKQ
HSPVYTYTISIGGDPDAPALTNVLLTVPEGGQAVITKDHLFVQSMNSMDYLYEVIEGPAH
GRLAWAASHSWASREEITEFTNDDILHHRLLYQHDDSETLEDDIPFVAIRQGEGSAEPDA
EEVRGVFRVSIQPVNDHAPVQVVNKVFNVVRNGQHLLTTDDIAFTDKDSGFSDTQLVLAR
KDILFGSIVSVDDRTHQVYRFTQDDLRKKKILFVHSGADRGWIQLQVSDGLHQTTALLEV
QASDPYIKIVNNTGLVIHQGSQGNIDASVLSLETNMDIRSDEEIRFLITTPPKWGTVLRG
EQPVMAFSQRDLLAGLISYRHNGSRNSQDELQFTVEANEVVVEDTLAISVFLDTHPSPLR
IVNHKEIHVFQGEAAGIKEEYLLVTHEEIPPQDIVYLVSSPPASGFLAMLQHSRDSNEQP
SLDPIQSFTQEDINNDRVLYLHSKPKEERDQFVVDITAGSADPLEGVVVSLAVLPITIPL
DVRNITVPGGGSATLSKGILNIPNTYYAALGVEFRVLEPPRFGTLLNSQRPEDGGLHSFT
WSQVENQQIQYRQDGPRAQADSFTLLANASAMERQSQPRTLFIAILPRSSRAPRLRLNAG
LQLREGATAAIGPHVLSAEDEDSSAEEVTYSIQPPANGKVVLRSAPGTEVRRFTQAQINN
GLIFFVHQGPMDGGFAFDLWDGENLSPGHFFLIRAHREPLISLAKKQSLTVCPGALQPLT
SQNLQAVSSSPTGSTTLYYSIEQAPRLGRLSTSRGEEIRNFTQAQVDSGLIFYQHEMPEE
PFWLAQDAIHFRVVSPTTISDSFILLVLISFEARCPQRSTQLWRNTGLQLTRAQRAEIGT
SVLDASNLLSQISVPERAAHDVVFLVTELPAHGQLLVAGGGPGPQPLFLQSDLATGRLAY
AHGGEGVSEDRFRFKAWLQPRMQQSIHPPQEGVVISEAFNITVTSSGSTKAPQVVRRREV
LRVPPGSVVTLSQEYLDVTDSPGSPQDMVYSVHQRPLAGHLANAHNPREPINRFTQADVN
AGHVVFVATRSRATGSLALSLSDGHHPPTLTSLEIEVLPSVSTAASPVLLEVPQALNRAT
MSHRHLLGASQRGTGNTLYRITRDPRFGQVQVNQRPARGFSQKQLDRGEVTFTFTDLTSP
EDNFQFLATSRAANRTGMVNVTVRALVKAQPGSVWPRGTTALLDTGILDASELANHTRSV
PVFKIHRVPRGSRLVRVSRDPGQPTTPIETFSQSELEQGLVGLEVLDAGEADQPLQSDSF
VFELAAAGVPPALASLGYSTEPYNASKAYSVTLLTGLPAPPPQGTARSHPNSSELGMPPT
TWPIPGATTSPSPVEGGTFLSFIEANMFSIIIPICLIFLLLALILPLLFYLHKRNKTGKH
HVQGIPNSKAKNGAVPDQETFRRTDPNQGIPLTTVNALEGKGTGPPPQGTGPGAPPDPEL
LQYCQTSNPPLKNNQYWV
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atgggtactcaaggtggcattgccaccctgctgctgctgctgctgctggcctgtcagccc
cagcccctccgtgcaggacccctggctggagcctctttcttcggggacggctacgtggag
atgccgctggcggattcctcgcgcacggtgcggctccagctgcggctgtacaccagccag
gggaatgggctgctcttcctggccgctggccagcccgaccacctcctgctccagctgcgg
gccagcagactgcaggccaggctgcggctgggctcggaggaggtgaccctgtactcccca
gaggacctgcagttcaataacctggcggtgcacgatgttgagctgctggtggaagatggc
aggatgacactgaccatcgacagccacatcaacagctcagtggacatcccagggcccgta
cgggagctggacatccagtacggcctctatgctggtgggacaggcaggcttgacgccccc
ctccccctgccgtacctcgctgaggccagctcacccttcagaggttgtctccacttagtg
acattcaacggcctggatgtcctctcccgtctgtcctcagatggcagctcaaagatcttc
caccgggttcaggaagggtgcagcacacagttctctgcagatcctgaagacccctttggg
ttcctggggccacactcctacattgcatttcctacatgggatgcgagtgaagaagcaacc
attgagtttgtgataacaacgagcatcacccaggcacccctcatctaccacgcagggctg
gagaatgacttcttctacttggagatctccaatgggcgcctgagagggtttgttgagaag
gggaacggcatcatcatcctgcacaacaatgtcttcatcagcgatgagcaacagcattat
gtcaaagtctacacagacatccacaagtttgagatactgatagattactacgcctcatcc
acatccaaccggggcatcaacaactacctggaccttcagggaaacctattcatcggaggc
atgaatgaaaaagccttgcaaaggctgagggagcaccatcttgctttcatctcagtgtgg
accatgaccaacaactcatttgttggctgcttggaggacctgcggataaatcagcagagg
aggagtctgcaagacgcggtgatcacaaaagacatcacatcaggctgtggaaagcaggac
cactactgggactatgacgaggtgtacgagcaggatgaggcacccacttcaccacctcca
gatgtctggtcaggagcaccaggcctggtggtggaaccatgccggccagacaacagcttc
ccaccggccttcgccaacatcagcaggctgctgcacgtcagccccctcatcgtctctgaa
ggaggcatggcttatctggagtggaaacatgcccagccaacagtggacttgagccttgcg
aacatccgccagtcccaaatcctcttcagcatcaccaatgaccccaggcacggccagctg
gagctggacattcctgggtccaggagcagaaggaagttcaccttattggacattgtgaat
cggaaagtcagatatgttcacgatggttctgaggggcccatggaccaactgatgctggag
gtgacagtgactgcccagcaaggcgtcccagagtgcttgcggcaggggcagatgtacctg
ctgcccatcatgatcaaccccatcaatgatgccccacaagtgatttttccccatgggaat
cacatgacaatcctgaagcatacacggaagcacctgaccacagacatcctgcaagtccta
gatgatgacacatcctgtgatgacctcgaattccagctgcacggtggccagcagatggag
gagggctatgtggaatacgacttccaccctggagtgcccattgaagagttctcctgcagg
gacctggaagcgggcaatgtggtctacgtgcaccagagcgggacaaactcacagctcacc
ttgcaggtgagtgatggcaccatcccaagccccattgccaccctgaggatcctcgccatt
gaccctgacatccacctgcacaacaacactggcctctccatctcccaaggagaggctgca
cgcattaccacagccaacctttcagtggagacaaatgctgtgaaacaacgggtcgccatc
ctctatgtcctcagagagcctctgaggtatggtgagatccagaagcaagtgagcatggga
ggggaatggaaaaaagttgagtccttccaccagcaagacctggaacaagggcgcatccag
tatttcagcacagacccagaataccggctagaagatgttgtggagaagctgacattcgaa
gtccaggtggggcagaaggtcttacaagacaacacctttttcataaggattaaaagagcc
acaattaagatgaagaccatggtccccctccagatgaagaacaggcggcacagaaatatc
accagtaaggagctggaggcaatgttagaagatccaaatgctgccccggtccccttccgc
tacttggtcatccaggctcccaaaaagggaaacttggagctgcttggcaacaggctgacc
gaaggctttggatttacccaagatgacctgcaaaaaaaccacctgagctacagtgcaacc
atcaggaattctcagcaagcccaggacaccttccagtttcgcgtccatgccggtaagcag
cactctcctgtctacacctacacaatcagcatcggtggggaccctgatgctccagccctg
accaacgtcctcctcaccgtgccggaaggcgggcaggcagtcatcaccaaggaccacttg
tttgtgcagagcatgaacagcatggactacctctacgaagtgattgaggggccagcacac
ggtaggctggcctgggctgcgtcccacagctgggcctccagagaagagatcacagagttc
accaacgatgacatcctgcaccaccggctgctgtaccagcatgacgactccgagacgcta
gaggatgacatccccttcgtagccatcaggcagggagagggtagcgctgagcctgatgca
gaggaggtgagaggtgtttttagagtctccatccaacctgtaaatgaccatgccccagtt
caggtggtgaacaaagtattcaatgtggtgcgcaatgggcagcacctgctgacaacagat
gacattgcctttactgacaaggactctggcttctctgacacacagctggtgctggcaagg
aaggacattttgtttggcagcatcgtgtctgttgatgacagaactcaccaggtctatcgg
ttcacacaggatgacttgaggaagaagaagatcctttttgttcattcaggggctgaccgg
ggctggatccagctacaggtctcagatggcctccaccaaaccacagccctcctggaagta
caggcttcagacccctacatcaaaatagtcaacaacaccggtctggtcatccaccaaggg
agccaagggaacattgacgcatctgtcctcagcctggaaaccaacatggacatcaggtca
gatgaagagatacggttcctgataacaaccccccccaaatgggggactgtgctgagaggg
gaacagccagtcatggccttctcccagagggacctgctggcaggactgatctcctaccgc
cacaatgggagcaggaacagccaagatgagctccagttcactgtagaagcaaatgaagtg
gtggtggaggacacactggccatcagcgtgttcttggacacccatcccagccccctgcgc
atagtcaaccacaaggagatccacgtcttccagggggaagcagctgggatcaaggaggag
tacctactggtgactcatgaagagattcctccccaagacatagtctacctcgtgagcagc
ccaccagcttctggcttcttggcaatgcttcagcacagccgagactcgaatgagcagccc
agcctggaccccatccagtctttcactcaggaggacatcaacaatgacagagtcctctac
ctccactctaagcccaaggaggagcgtgaccagtttgttgtggacatcacagccggcagt
gcggacccgctggagggggtggtggtgagcctggcagtgctccccatcaccatccccctg
gatgtccgcaacatcacagtgccaggaggtggctctgctaccctctccaagggcatcctc
aacatccccaacacctactacgcagctcttggtgtggagttcagggtgcttgagcccccc
cggttcggcaccctcctgaacagccagcggcctgaggatggtggactgcacagcttcacc
tggagccaggtggagaaccagcagatccagtacaggcaggacggcccccgggcccaggcc
gacagcttcaccctcctggccaacgcctcggcgatggagcggcagagccagcccaggacc
ctcttcattgccatcctgccccgcagctcccgggcgccccggctgaggctcaacgccggg
ctgcagctgcgggaaggtgccacagctgccatcggcccccatgtcctgagtgccgaagac
gaggactcctcggcggaagaggtgacgtactccatccagccccctgccaacgggaaggtg
gtgctgaggtcagcacccggcactgaggtccgacgcttcactcaagcccagatcaacaac
ggcctcatcttcttcgtgcaccaagggcccatggatggaggctttgccttcgacctgtgg
gacggtgagaacctatctcctgggcacttcttcctcatcagagcccacagagagcccctc
atcagtctggccaagaagcagagcctcactgtctgcccaggtgccttgcagcccctcacc
agccagaacctgcaggcagtgagctccagccccacaggttccaccaccctgtactacagc
atcgagcaagccccgcgcctgggcaggctcagcacctcccggggtgaggaaatcaggaac
ttcacccaagcccaggtggatagtgggttgatcttctaccagcatgagatgccagaggag
ccattctggctggcccaagatgccatccacttccgcgtggtctctcctaccaccatctcc
gattccttcatcctcctcgtgctgatctcctttgaggccaggtgtccccagcgctccact
cagctctggagaaacacaggtctccagctcacaagggctcaacgggctgagatcggcacc
tcagtgctggacgcctccaacctcctaagccaaatctcagtccctgagagggctgcacat
gacgttgtcttcctggtgacagagctgccagctcatgggcagctcttagtggctgggggg
ggcccggggccccagccactcttcctgcagtcagatctggccacaggacgcctggcgtat
gcccatggtggtgagggcgtctctgaagaccgtttcagatttaaggcttggctccagcca
cggatgcagcagtccatccatcctcctcaggaaggggtggtcatctccgaagctttcaat
ataacggtgaccagcagcggcagcaccaaggcaccgcaggtggtgaggcggcgggaagtg
ctgcgggtcccaccaggctctgtggtgaccttgtcccaggagtacctggatgtgacagac
tcaccaggttccccacaggacatggtgtacagtgtccaccagagacccctcgctggccac
ctggccaatgcacacaacccacgggagcccatcaaccgcttcacccaagcagatgtcaac
gcaggccatgtggtgtttgttgctaccaggagccgtgccacagggtccttggctctgagc
ctctccgatggccaccacccacccaccttgacctcgctggagatcgaggtgctgccatca
gtgagtactgctgccagcccggtgctgctggaggtgccccaagccctgaacagagccacc
atgtcccaccgtcacctcctgggagcctcacagcgaggaacaggcaacaccttgtacagg
atcaccagggacccaaggtttggccaagtgcaggtcaaccaaaggccagcacgaggcttc
tcacagaagcagctggaccgtggggaggtgacgttcaccttcactgacctcacctctcct
gaggacaacttccagttccttgccacgtcgcgggcagccaacaggaccgggatggtgaac
gtgactgtccgtgccttggtgaaggctcagccgggcagtgtgtggcccaggggcaccacg
gccctcctggacaccggtattcttgatgccagtgaactggccaaccacaccaggagtgtc
ccagtcttcaagatccacagggtgccccgtggcagccgtcttgtgagggtctccagggat
ccaggacaacccaccactccgattgagactttcagccagagcgagctggagcaggggctg
gttgggctggaggtgctggatgctggggaggctgaccagcccctgcagagtgacagcttt
gtctttgagctggcagctgctggtgtgccgccagccctggcatccctgggctacagcact
gagccctacaatgcctcgaaagcctacagtgtcaccctgctcacaggcctcccagcaccc
ccaccccagggcacagcacggagccaccccaacagcagcgagctgggaatgccccccacc
acctggcccatccctggtgccaccaccagtcccagccccgtagaggggggcaccttcctc
agcttcattgaggccaacatgttcagcatcatcatccccatctgcctcatcttcctcctg
ctggctctcatcctgcccctgctcttctacctgcacaagcgcaacaagacggggaagcac
catgtccagggcatccccaactccaaggccaagaacggggctgtgccagaccaggagacc
ttccggaggacggaccccaaccaaggcatccccctaacaactgtcaatgccctggagggc
aagggcacaggtcccccaccccagggcacaggtcctggggcaccaccggaccccgagctc
ctccagtactgccagacttccaacccccccttgaaaaacaaccagtactgggtgtga
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integrated database retrieval system
