Columba livia (rock pigeon): 102085958
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Entry
102085958 CDS
T02912
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03015
mRNA surveillance pathway
clv04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102085958
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
102085958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clv03021
]
102085958
03019 Messenger RNA biogenesis [BR:
clv03019
]
102085958
Transcription machinery [BR:
clv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102085958
Messenger RNA biogenesis [BR:
clv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102085958
U7-dependent histone pre-mRNA processing factors
102085958
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
102085958
NCBI-ProteinID:
XP_005514615
UniProt:
A0A2I0LI21
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
ARTLINGDPSAIVPAGSSSPLSPVSPQARVKILASLVTQFDVPAKAEVLAFVLEDARSRL
DLALAWLFQEYNRHLARGAAGDLHRYDQCLVGLLGGLHDKPDQKDGIFTKVVLEAPLITE
SALEVIRKYCEDESRTYLGMSTLCDLIFKRPSRQFQYLHVLLDLSSHEKEKVRHQALQFI
KRMYERDQLREYVEKFAFNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLA
LLPLNHKLIHELASVYTEAIADIKRTVLRVIEHPIRGMGMNSPELLLLVENCPKGAETLV
TRCLHTLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPI
VVKEVFNRLLGTQHGDGSSAVSPLSPGELLVALHNIDSSKCDMKSIIKATNLCFAERNVY
TSEVLAVVLQQLMELSPLPVLLMRTVIQALAMYPRLGGFVTNILQRLIMKQVCPAVRPAV
QMSGLALGGPLGLGLVALGGSRPSWYPHLGGFVTNIPQHLMMKQVCLAVHPFVCLSIHPF
VCLSVHPFVCPSIPLSVCPSICPLSLGFGFGGSGVSQTLMVPTSGWLCRQHPATPHHETR
PFVCPSLCLSVHPSVPCPLGLGLVALGGSRPSLYPHLGGFVSNILQHLMMKQVCLSVHPF
VWLSIGTSVCPSGGWVSLGFGFGGSGGFQTLIVPTSGWLHHQHPATPHNEIGLSVHPSIY
LSVHPSLCLSICPSLCLSVHPSVPCPLGLGLVALGGSRPSWYPHLGGFVTNILQHLIMKH
VRLSVRPFVWLSISMSVTPSGRLSVPQGVGCPLGLGLVALGGSRPSWYPHLGGFITNIL
NT seq
2521 nt
NT seq
+upstream
nt +downstream
nt
cgccaggacgctcatcaatggggaccccagcgccattgtccccgcgggctcctcgtcacc
gttgtcccccgtgtccccccaggcccgcgtgaagatcctggcgtcgctggtgacgcagtt
cgacgtccccgccaaggccgaggtgctggcgttcgtgctggaggacgcgcggtcgcgcct
ggacctggcgctggcctggctgttccaggagtacaaccggcacctggcgcgcggcgccgc
cggagacctgcaccgctacgaccagtgtctcgtggggctgctgggggggctgcacgacaa
gcccgaccagaaggacgggatcttcaccaaggtggtgctggaggcgccgctgatcaccga
gagcgcgctggaggtgatccgcaagtactgcgaggacgagagccgaacctacctgggcat
gtccactctttgcgacctgatcttcaagcgcccatcacggcaattccaatacctgcacgt
cctgctggacctcagctcccacgagaaggagaaggtccgccatcaagccctgcagttcat
caagcgcatgtacgagcgggaccagctacgtgaatacgtcgagaagttcgccttcaacta
tttacagctcctggttcatcccaacccgccttcggtgcttttcggggcggacaaggacac
agaggtggcggcgccgtggaccgaggagaccatcaagcaatgtctttacctgtacctggc
gctcctgccgctcaaccacaagctgatccacgagctggcgtccgtgtacaccgaagccat
cgccgacatcaaacgcaccgtcctgcgcgtcatcgagcacccgatccgcggcatggggat
gaactcgcccgagctgctgctgctggtggagaattgtcccaaaggagccgagacgctggt
gacgcggtgtctgcacaccctgacggacaaagtgccgccctcgcctgagctggtgaagag
ggtccgggacctttatcacaagcggcttccagacgtgaggttcctgatccccgtcctcaa
cgggctggagaagaaagaggtgattcaggcgctgcccaagctcatcaagctcaaccccat
cgtggtcaaggaggttttcaaccggctgctggggacacagcacggtgacggctcctcggc
cgtgtccccgctgagcccgggcgagctgctggtcgccctgcacaacatcgactcctccaa
gtgcgacatgaaatccatcatcaaagccaccaacttgtgcttcgccgagcgcaacgtgta
cacgtcggaggtgctggccgtggtgctgcagcagctcatggagctcagcccgctgcccgt
gctgctcatgcgcaccgtcatccaggcgctggccatgtacccgcgcctcggcggcttcgt
caccaacatcctgcagcgcctcatcatgaaacaggtctgtccggctgtccgtcccgctgt
ccagatgtctggtttggccctcgggggtcccttgggtttgggtttggtggctctgggggg
ttccagaccctcatggtacccacatctgggtggctttgtcaccaacatcccgcagcatct
catgatgaaacaggtctgtctggctgtccatccctttgtctgtttgtccatccatccctt
tgtctgtctgtctgtccatccctttgtttgtccatccatccctttgtctgtctgtccatc
catctgtcccctgtcccttgggtttgggtttggtggctctggggtgtctcagaccctcat
ggtacccacatctgggtggctttgtcgccaacatcctgcaacacctcatcatgaaacacg
tccgtttgtctgtccatccctttgtctgtctgtccatccatctgtcccctgtcccttggg
tttgggtttggtggctctggggggttccagaccctcattgtacccacatctgggtggctt
cgtctccaacatcctgcagcacctcatgatgaaacaggtctgtctgtctgtccatccctt
tgtctggctgtccatcgggacgtctgtctgtccctcagggggttgggtgtcccttgggtt
tgggtttggtggctctggggggttccagaccctcattgtacccacatctgggtggcttca
tcaccaacatcctgcaacacctcataatgaaataggtctgtctgtccatccatccattta
tctgtctgtccatccatccctttgtctgtctatctgtccatccctttgtctgtctgtcca
tccatctgtcccctgtcccttgggtttgggtttggtggctctggggggttccagaccctc
atggtacccacatctgggtggctttgtcaccaacatcctgcagcacctcatcatgaaaca
cgtccgtttgtctgtccgtccctttgtctggctgtccatctctatgtctgtcactccatc
gggacgtctgtctgtccctcagggggttgggtgtcccttgggtttgggtttggtggctct
ggggggttccagaccctcatggtacccacatctgggtggcttcatcaccaacatcttgta
g
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