KEGG   Columba livia (rock pigeon): 102085958
Entry
102085958         CDS       T02912                                 
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
clv  Columba livia (rock pigeon)
Pathway
clv03015  mRNA surveillance pathway
clv04530  Tight junction
Brite
KEGG Orthology (KO) [BR:clv00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102085958
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    102085958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clv03021]
    102085958
   03019 Messenger RNA biogenesis [BR:clv03019]
    102085958
Transcription machinery [BR:clv03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102085958
Messenger RNA biogenesis [BR:clv03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     102085958
    U7-dependent histone pre-mRNA processing factors
     102085958
SSDB
Motif
Pfam: Symplekin_C
Other DBs
NCBI-GeneID: 102085958
NCBI-ProteinID: XP_005514615
UniProt: A0A2I0LI21
LinkDB
Position
Unknown
AA seq 839 aa
ARTLINGDPSAIVPAGSSSPLSPVSPQARVKILASLVTQFDVPAKAEVLAFVLEDARSRL
DLALAWLFQEYNRHLARGAAGDLHRYDQCLVGLLGGLHDKPDQKDGIFTKVVLEAPLITE
SALEVIRKYCEDESRTYLGMSTLCDLIFKRPSRQFQYLHVLLDLSSHEKEKVRHQALQFI
KRMYERDQLREYVEKFAFNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLA
LLPLNHKLIHELASVYTEAIADIKRTVLRVIEHPIRGMGMNSPELLLLVENCPKGAETLV
TRCLHTLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPI
VVKEVFNRLLGTQHGDGSSAVSPLSPGELLVALHNIDSSKCDMKSIIKATNLCFAERNVY
TSEVLAVVLQQLMELSPLPVLLMRTVIQALAMYPRLGGFVTNILQRLIMKQVCPAVRPAV
QMSGLALGGPLGLGLVALGGSRPSWYPHLGGFVTNIPQHLMMKQVCLAVHPFVCLSIHPF
VCLSVHPFVCPSIPLSVCPSICPLSLGFGFGGSGVSQTLMVPTSGWLCRQHPATPHHETR
PFVCPSLCLSVHPSVPCPLGLGLVALGGSRPSLYPHLGGFVSNILQHLMMKQVCLSVHPF
VWLSIGTSVCPSGGWVSLGFGFGGSGGFQTLIVPTSGWLHHQHPATPHNEIGLSVHPSIY
LSVHPSLCLSICPSLCLSVHPSVPCPLGLGLVALGGSRPSWYPHLGGFVTNILQHLIMKH
VRLSVRPFVWLSISMSVTPSGRLSVPQGVGCPLGLGLVALGGSRPSWYPHLGGFITNIL
NT seq 2521 nt   +upstreamnt  +downstreamnt
cgccaggacgctcatcaatggggaccccagcgccattgtccccgcgggctcctcgtcacc
gttgtcccccgtgtccccccaggcccgcgtgaagatcctggcgtcgctggtgacgcagtt
cgacgtccccgccaaggccgaggtgctggcgttcgtgctggaggacgcgcggtcgcgcct
ggacctggcgctggcctggctgttccaggagtacaaccggcacctggcgcgcggcgccgc
cggagacctgcaccgctacgaccagtgtctcgtggggctgctgggggggctgcacgacaa
gcccgaccagaaggacgggatcttcaccaaggtggtgctggaggcgccgctgatcaccga
gagcgcgctggaggtgatccgcaagtactgcgaggacgagagccgaacctacctgggcat
gtccactctttgcgacctgatcttcaagcgcccatcacggcaattccaatacctgcacgt
cctgctggacctcagctcccacgagaaggagaaggtccgccatcaagccctgcagttcat
caagcgcatgtacgagcgggaccagctacgtgaatacgtcgagaagttcgccttcaacta
tttacagctcctggttcatcccaacccgccttcggtgcttttcggggcggacaaggacac
agaggtggcggcgccgtggaccgaggagaccatcaagcaatgtctttacctgtacctggc
gctcctgccgctcaaccacaagctgatccacgagctggcgtccgtgtacaccgaagccat
cgccgacatcaaacgcaccgtcctgcgcgtcatcgagcacccgatccgcggcatggggat
gaactcgcccgagctgctgctgctggtggagaattgtcccaaaggagccgagacgctggt
gacgcggtgtctgcacaccctgacggacaaagtgccgccctcgcctgagctggtgaagag
ggtccgggacctttatcacaagcggcttccagacgtgaggttcctgatccccgtcctcaa
cgggctggagaagaaagaggtgattcaggcgctgcccaagctcatcaagctcaaccccat
cgtggtcaaggaggttttcaaccggctgctggggacacagcacggtgacggctcctcggc
cgtgtccccgctgagcccgggcgagctgctggtcgccctgcacaacatcgactcctccaa
gtgcgacatgaaatccatcatcaaagccaccaacttgtgcttcgccgagcgcaacgtgta
cacgtcggaggtgctggccgtggtgctgcagcagctcatggagctcagcccgctgcccgt
gctgctcatgcgcaccgtcatccaggcgctggccatgtacccgcgcctcggcggcttcgt
caccaacatcctgcagcgcctcatcatgaaacaggtctgtccggctgtccgtcccgctgt
ccagatgtctggtttggccctcgggggtcccttgggtttgggtttggtggctctgggggg
ttccagaccctcatggtacccacatctgggtggctttgtcaccaacatcccgcagcatct
catgatgaaacaggtctgtctggctgtccatccctttgtctgtttgtccatccatccctt
tgtctgtctgtctgtccatccctttgtttgtccatccatccctttgtctgtctgtccatc
catctgtcccctgtcccttgggtttgggtttggtggctctggggtgtctcagaccctcat
ggtacccacatctgggtggctttgtcgccaacatcctgcaacacctcatcatgaaacacg
tccgtttgtctgtccatccctttgtctgtctgtccatccatctgtcccctgtcccttggg
tttgggtttggtggctctggggggttccagaccctcattgtacccacatctgggtggctt
cgtctccaacatcctgcagcacctcatgatgaaacaggtctgtctgtctgtccatccctt
tgtctggctgtccatcgggacgtctgtctgtccctcagggggttgggtgtcccttgggtt
tgggtttggtggctctggggggttccagaccctcattgtacccacatctgggtggcttca
tcaccaacatcctgcaacacctcataatgaaataggtctgtctgtccatccatccattta
tctgtctgtccatccatccctttgtctgtctatctgtccatccctttgtctgtctgtcca
tccatctgtcccctgtcccttgggtttgggtttggtggctctggggggttccagaccctc
atggtacccacatctgggtggctttgtcaccaacatcctgcagcacctcatcatgaaaca
cgtccgtttgtctgtccgtccctttgtctggctgtccatctctatgtctgtcactccatc
gggacgtctgtctgtccctcagggggttgggtgtcccttgggtttgggtttggtggctct
ggggggttccagaccctcatggtacccacatctgggtggcttcatcaccaacatcttgta
g

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