Columba livia (rock pigeon): 102086147
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Entry
102086147 CDS
T02912
Symbol
ZSWIM8
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clv04121
]
102086147 (ZSWIM8)
Ubiquitin system [BR:
clv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
102086147 (ZSWIM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ku_PK_bind
Motif
Other DBs
NCBI-GeneID:
102086147
NCBI-ProteinID:
XP_021140009
LinkDB
All DBs
Position
Unknown
AA seq
1819 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKMKD
GLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
ADEFQRGEQLFRVRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTDQCLNYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTISPQRRRDLCSQLRQWQLKVIDNVKRGQHKKSLEKLFQGFKPAVEACYFNWEEAY
PIPGITYSSTDKKNSFCWVKAIQQRSCRLQCAETASEAGRTPGQEPGGPCLQPGDRLRPS
PQEPAVRPKELTGKRKVVSETPQRVLRRLSAEGDKAVYKTAVGKAKLPVSKGLTSKHSGK
RRMSSEDSSLEPDLAEMSLDDSSLALGAEASNTFSFTESPLSRSYRDTFEEDGGVYFSEG
PEPSVRSSSMAKKSPKDPVGEMGSGDDDLPSADENSSGVGLKAEEVGENGAVGGGDDGEE
EDDYQVYYLNPQEVAKEDDDKAEGGNEEEQDIFAGIKPLEQENRMEILFACAEALYAHGY
GNEACRLTVELARDLLANPPDLKVEQPPTKGKKNKVSTSKQTWMATNTLXXXXXXLSERL
EYHNLAFRIGMFALELQRPPASTKALEVKLAYQESEIVALLKKIPLGTNEMNTIRGRAEE
LREGTLCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAA
LGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQT
LSSFYSSSKPTVANQKSPSKHAAQSTAAIQQLPGTSVAQQAAVSTAVQSSPENFVEKSAQ
ESSQRSPCEPAAESTVLKQEGKVPSRLALGSRGGYNGRCWGSPVRQKKKHTGMASIDSSA
PETTSDSSPTLSRRPLRGGWATTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASGGARAK
TVEVGRYKGRRLESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGH
QGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECW
DGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNL
MLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGTPAQREGATGCSASGARAAS
EAVRGLTENRVTSEPTTVTVAAAVTAAATVMPVISVGSTMYQQHTMAGPAMAHTHTQGLH
PYTTLQTHIPCNPQYIGHTIQHMPRPAVFPVPGSAYPQGVHPAFIGAQYPYSVTTPSLAA
TAVSFPGVPVPSMTQIAVHPYHSETGLSLSSNVAIGSVHAGSTFPAIQGASLTSLSSQPN
SLVTGGFPAEDEQHSQPVSPQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTE
DVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHVHNHLRTPAFH
QLVQRCQQAYLQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRS
KQKNELWQRVSLEMTTFSP
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatgttcgcggagtgggaggacggggagaggttttcatttgaagactcggat
cgctttgaggaagactctctttgttccttcatctctgaggcagagagcctttgccagaac
tggagaggatggaggaagcaatcggctggacccaattctcccactgtcaaaatgaaagat
gggctggtaatcccattggtggaactgtctgcaaaacaggttgcatttcacattccattc
gaggtggtggagaaagtttatcctccagtgcctgagcaactgcagcttcgaatcgccttc
tggagtttcccagaaaatgaggaagatatcagattgtactcgtgtttggcgaatggcagt
gcagatgagttccagcgaggggagcagctgttccgggtgagggccgtcaaagaccctctc
cagataggtttccatctgagcgccactgtggtacccccacagatggtgccacccaaaggt
gcgtacaacgtggcggtgatgtttgatcgctgcaggatcacgtcgtgcagctgcacctgc
ggagctggggccaagtggtgtgctcacgtcgtggcgctctgcctcttccggatacacaac
gcatctgcagtatgcttacgagcacctgtttctgagtccttgtctcggctacaaagagac
caattgcaaaaatttgctcagtacctaatcagtgaacttccacaacagattcttccaact
gctcaacgcttgctggatgagctgttatcttctcagtctactgccatcaacacagtgtgt
ggagccccagatcccactgctggaccctctgcatcagatcaaagcacgtggtatttagat
gaatctactctgagtgacaacataaagaagacccttcataaattctgtggcccctctcct
gttgttttcagtgatgtgaattcaatgtatctctcttccaccgagccaccagctgctgct
gagtgggcctgtctcctgcgccccctgcgaggaagagagcctgagggcatctggaacctg
ctttccattgtgcgggagatgtttaagagacgggatagcaatgcagcccctttgctggag
attctgactgaccagtgtctcaactatgagcagataactggctggtggtacagcgtgcga
acatctgcatcacacagcagcgctagcgggcacacgggacgcagcaatggccagtcagaa
gtagctgcccatgcttgtgcaagtatgtgtgatgagatggtggttctttggaggttggca
gtcctggacccgacaattagtccacagaggcgcagggacctttgctcacagctcagacag
tggcagctgaaagtcatagataatgttaagaggggtcagcacaagaaatcactggagaag
ctcttccagggtttcaagccagctgtggaagcctgttacttcaactgggaggaagcttat
cccattcctgggatcacatatagcagcactgacaagaagaactctttctgttgggtaaag
gccatccagcaaaggagctgccggttgcagtgtgcagaaactgcctctgaggctggtaga
acccctggacaggagcctgggggaccatgtctgcagcctggggacaggctgcgtccctcc
ccccaggagcctgcagttcgtccgaaggaacttactggaaagcggaaagttgtctctgaa
acgccacaaagggttctgagacgactttcagcagaaggtgataaagctgtgtataagact
gcagtgggcaaagcaaagttaccagtgagcaaaggcttgaccagtaagcacagtgggaaa
cgccgcatgagcagtgaagacagctctctggaaccggacttggcagagatgagtctggat
gacagcagcttggctctgggggcagaagccagcaatacatttagttttacggaaagccca
ctgagcaggagctacagggacacctttgaggaggacggtggggtgtacttctctgaggga
cctgagcccagtgtcaggagcagttccatggccaagaaatcgcccaaggatcctgtgggt
gaaatgggtagtggtgatgatgacctgccttctgcagatgagaacagcagtggtgtgggc
ctgaaggcagaagaagtgggagagaatggtgcagtggggggaggagatgatggagaagag
gaagacgattaccaggtatactatctaaatccacaagaggtagccaaggaagatgatgac
aaagctgaaggaggaaatgaagaggaacaagatatatttgctggtataaagcctctggag
caggagaaccggatggagatcctctttgcctgtgcagaggccttgtacgcacatggatat
ggtaatgaagcatgccgcttaactgtggagcttgccagggacctactggccaacccacca
gatctaaaagtggagcagccaccaactaagggcaaaaagaacaaggtatcaaccagcaaa
cagacgtggatggcaaccaacaccttgnnnnnnnnnnnnnnnnnnctgagtgagcggctg
gagtaccacaacctggccttccgaataggaatgtttgctctggagctgcagaggccaccg
gcctctacaaaggctctggaggtgaagctggcatatcaggagtctgagattgtagccctc
ttgaagaagattcccttgggcactaatgagatgaacactattcgaggaagagccgaagaa
ctgcgagaagggacgttatgtgattaccgtccagtcctgcctctgatgttggctagcttt
atatttgatgtcctgtgcactccagtggtttcccctacaggctctagacccccaagccgt
aattggaataatgaaatgcctggagatgaagagcttggttttgaggcagctgttgctgct
cttggcatgaaaacaactgtcagtgaagcagaacatcctctgttgtgtgaaggcacccga
agggagaagggggatctggctctagccctgatgattacttacaaggatgatcagtctaag
ctgaagaagattttagacaaactcctagacagagagagtcaaactcacaaaccacagacc
ctgagttctttctactcatccagcaagcctacagtagcaaatcaaaaatctccttccaaa
cacgctgcccagtccactgcagcgatccagcaacttccggggacttctgtcgctcagcaa
gctgctgtaagcactgcagtccagagcagtcctgagaactttgtggagaagagtgcacag
gagagctctcagaggtccccctgtgagccagctgcagagtccactgtcttgaagcaagag
ggaaaagtccccagtcgcctggcccttggaagcagaggtggatacaacgggagatgctgg
ggttcacctgtcaggcagaagaagaaacacacaggcatggctagcattgacagcagcgct
cctgaaaccacctctgacagttctccaacgctcagtcggcgtccgctacgtggaggctgg
gcgacaacatcgtggggcagaggacaggacagtgacagcatcagcagttcttcaagtgat
tcactgggatcttcctcttccagtggcagcaggagagccagtgggggagcccgtgcaaag
actgtggaagttggcaggtataaagggaggcggctggagagccatgctcctcatgtgcca
aaccagccctcggaggcagctgctcacttctactttgaattggccaagacagtccttatc
aaagcaggtggaaatagcagtacctccatcttcacccacccttcctccagtggtgggcac
cagggaccacaccgcaaccttcacctctgcgccttcgagattgggctgtatgcactaggg
ctgcacaactttgtgtctcccaactggctctctcgaacttactcctcccatgtctcttgg
atcacagggcaggccatggagattggtagcgcagccttgaacatcttggtggagtgttgg
gatggacatctcactcccccagaggtggcatcattggcagacagagcttcacgggccaga
gactccaacatggtgcgggcagctgctgaactggcactcagctgcctgccccatgctcat
gccctgaacccaaatgagatccagagggctctggtgcagtgtaaggagcaggacaatctg
atgctggaaaaggcctgtatggcagtagaagaagcagccaaaggaggtggcgtgtaccca
gaagtcctctttgaagtagctcaccagtggtactggctttacgaacaaactgttggtggg
accccagcccagagagaaggtgccactggttgcagtgccagtggcgcacgggctgcctcg
gaagcagtgcgtgggttgacagaaaacagggtgacctctgagccgaccactgtaacagtg
gcagccgcggtgactgcagcagcaacagtaatgccggtgatctccgtggggtcaaccatg
taccagcagcatacgatggcagggccagcgatggcacacacacacacgcagggcctccac
ccctacaccacccttcagactcacatcccctgtaacccccagtatattggacacaccatc
cagcacatgccacgtccagctgtcttcccggtgcctggctcagcatacccccagggtgtc
catccagcattcataggagcgcagtacccatattcggtaacaacaccgtcactcgcagct
acagcagtgtcattccctggtgtgccggtcccatccatgacgcagattgcggtgcatccc
tatcacagtgagacaggactgtcactgtcttccaatgtagcgataggaagtgtccatgca
ggatcaacgttcccagcgattcagggggcttccttgacaagtctgtcctcacagcccaac
tcccttgttacagggggttttcctgccgaggatgagcagcacagtcagcctgtgagcccc
cagggtctgcactacctccactccgcataccgagttgggatgctggctctggagatgctt
ggccgaagagctcacaacgaccatcccaacaacttctcccgcagcccaccttacacggag
gatgtaaaatggcttcttgggttagctgcgaagttaggtgtaaactatgtgcatcagttt
tgtgttggtgcagccaagggggtgctgagcccttttgtgcttcaggagatcatcatggaa
gctctacagaggctcaaccctgcccatgtgcacaaccacctgcgcaccccagccttccac
cagctggtgcagaggtgccaacaggcctatctgcagtatatccatcatcgtctgatccat
ctcactccagctgactacgatgactttgtgaatgccatccgcagcgccagaagcgccttc
tgcctgacacccatgggcatgatgcagtttaacgatattctccagaacctaaagcgcagc
aagcagaaaaatgagctgtggcaaagggtctctctggaaatgaccaccttctcaccgtga
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integrated database retrieval system
