Columba livia (rock pigeon): 102087010
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Entry
102087010 CDS
T02912
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clv04147
]
102087010 (COL18A1)
00535 Proteoglycans [BR:
clv00535
]
102087010 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
clv00536
]
102087010 (COL18A1)
Exosome [BR:
clv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102087010 (COL18A1)
Proteoglycans [BR:
clv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102087010 (COL18A1)
Glycosaminoglycan binding proteins [BR:
clv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102087010 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102087010
NCBI-ProteinID:
XP_013226958
LinkDB
All DBs
Position
Unknown
AA seq
1807 aa
AA seq
DB search
MALAPCCLGFLLLLACCFSSSETQLLDWIWSSRKTTGSTAAPSKGTTAPELLASVAAPTP
NTSTGTRGDQVEGDITTPQHWEQDPGTVAPMGEGTVAENTEQWDGNATGLVESTAQPSIA
PPRSTSPAPGQDAATSSTEDLQLLGTGTTKDLQLLGTGTAEDPQLLGTGTTDDLQLLGMG
TTKDPQFLGTGTTEDPQLRGTGTTKNPQFLGTGTTEDLQLLGTGTSKDQKLLGTVTPAVM
GIPVSLQRPVGPWPGSAPFPFSPGDDPHEQVVLPQNPTAQPPQTHHGASPAPPNLQRGTG
RWGLVLAGMNGSRSPPLPNRRLTNSVDPPLADNSRPLGFDLLTSAARLYSSSGVGLAAFL
PRLISPTGHCLPIPTHLPFCSVLGTHHVRLPNYLRHGSEVEIRAALHDWEGLLESRCHLY
VEWFLCLLLLPGCSASVPVTPPPCQGFCEAVRDQCWMHLAGGRLPLPCDALPEEDEGYSC
VFINASAENLSAEVSLLELIGDPPPEEILKIYGPDNNPGYVFGPNANTGQVARYHLPSPF
YRDFSLLFHIQPTSPRAGVLFAITDSSQSIIYMGVKLSELQAGKQQIIFYYTEPGSPSSN
AAATFTVPTLLNQWTRFAISVEEDEVILYLDCEEHERTHFERSPDEMELEDGSGLFVAQA
GGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDTEEVSGDFGSGAEGGHQPSGKDRGVP
GLVDAVPVTSPPVAAGGGVRSGGGSLQQAERTRAEETLRVSAGGTGPKGEKGEKGERGLK
GDSGTGSIVGTGSIKGEKGEKGEVGIKGSAGFGYPGSKGQKGEPGDPGSPRTLSRHADGS
VVEQITGPPGPPGKDGAPGRDGEPGDPGEDGKPGAMGPQGFPGMPGEPGLKGEKGDPGVG
PRGPPGPPGPPGPPGPSSKHDKLTFIDMEGSGFGGDLESLQGPRGPPGPPGPPGVPGLPG
EPGRFGMNQTDLPGPPGLPGRDGTPGSPGPAGPQGPSGRDGAPGQPGPKGERGDVGDLGL
PGAPGPKGSKGETGPAGAPGETGLAGLPGPMGPRGPPGPPGPPGPPGPGYEAGFSDMEGS
GLPFAASSPGQPGPEGPQGVPGLPGMKGEVGSPGQPGLPGPKGDAGVPGVDGRPGLEGFP
GPQGPKGDRGSPGEKGERGQDGVGLPGPPGPPGPPGQVITVSSEDRSLVALPGPEGRPGH
AGFPGPLGPKGDQGPSGPQGPPGLKGEKGEPGVIISPDGTVVTAKVKGEKGEPGLRGPVG
PSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVSSVLGLRGPPGPPGPPGPPGPP
GSVVYDSSNAFSDSGRPVLPAFPGFHQFPGQKGEKGDTGAPGPPGHFPYDLSHFGASLRG
DKGDAGPKGEKGEPGSTPLYGPSVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPP
GIGYEGRQGPPGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPGPPGTSGMSLGVTRPLPT
YQAMLSAAHELPEGSLVFLTDRQELYVRLRGGFRRVLLEEHTLIPSSALVSSLSSIHPSI
QPSISNHSRPQPSISNHSPPPTARPWRGDEVVANQHRLPEQPLLHHQHELLNSYYIHRRP
DPAPVAAYVHQDFQPALHLVALNTPLSGSMRGIRGADFQCFQQARQVGLAGTFRAFLSSR
LQDLYSIVRRADRAAVPIVNLRDEVLFSNWEALFTGSGAPLRAGARILSFDGRDVLRDAG
WPQKSVWHGSDAKGRRLPESYCEXQIPATGQASSLGSGKLLEQVASSCQHNFIVLCIENS
FMTAAKK
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggccctggccccatgttgcttggggtttctgctcctcctggcttgctgcttctcctcc
tccgaaacgcagctcctggactggatttggagcagcagaaagaccacaggaagcacggcg
gcacccagcaagggaaccacagcaccagagctgctcgcctctgtggcagctcccacgccc
aacacatccacggggacgcggggtgaccaggtggagggggacatcaccaccccgcagcac
tgggagcaggatcctggcacagtagcacccatgggtgaggggaccgtggctgaaaacacc
gagcagtgggacgggaatgccacagggctggtggagagcacggcacagccaagcatcgct
cctccccgcagcacgtcacctgcccccggccaggatgcggctaccagctccactgaggac
ctgcagctcctagggacagggaccaccaaggacctgcagctcctgggcacagggactgct
gaggacccgcagctccttggaacagggaccactgacgacctgcagctcctggggatgggg
accaccaaggacccacagttccttgggacagggaccaccgaggaccctcagctccgtggg
acagggaccaccaagaacccacagttccttgggacagggaccaccgaggacctgcagctc
ctggggacaggaaccagcaaggaccagaagctcctggggacagtgacccccgcagtgatg
gggataccggtgtccttgcagagacccgtgggtccctggccaggtagtgcgcctttccct
ttctcaccaggtgatgatccccacgagcaggtggtgctgccccagaaccccacagcacaa
ccaccccaaacccaccatggagcatcgcccgccccaccgaacctgcagcgtggcaccggg
cgctgggggctggtgctggccggcatgaatgggagccggagtcctccgttgcctaacagg
aggttgactaacagtgtggatcctcctcttgccgataactcccgtcctcttgggtttgat
ttactaacctccgctgcgcgactctacagtagcagtggcgtggggcttgcagccttctta
cccagactgatatcgccgactggccattgcctgcccatcccgacccacctgcccttctgc
agcgtgctgggcacccaccatgtcagattaccaaattacctccgccacggcagcgaggtg
gaaattcgggcggctttgcatgattgggaggggctgcttgaatcgcggtgccatctctac
gtggagtggtttctctgcttgctcctgctccctgggtgtagcgcctctgtccctgtaacc
cccccgccctgccaaggcttctgcgaggccgtcagagaccagtgttggatgcacttggcc
ggcggccgcctgcctctgccttgtgatgctctccccgaggaggatgaagggtattcttgt
gtatttattaatgcttctgcagagaacctgagcgctgaggtcagcctcctggagctgatt
ggagatcccccgccagaggagatcctcaaaatttatggccctgacaacaaccctggctat
gtcttcggccccaatgccaacacgggacaagtggcccggtaccacctgccaagccctttc
taccgggacttttccctcctgttccacatccagcccacctcgccccgggccggtgtgctc
tttgccatcacagactcctcacagagcatcatctacatgggcgtcaaactctcggagctg
caggcaggcaagcagcaaatcatcttctactacacggagccgggctcaccaagttcaaat
gcagcagccaccttcactgtgcccaccttgctcaaccagtggacgcgctttgccatcagt
gtggaggaggacgaagtcattctctacctagactgcgaggagcatgagcggacccacttt
gagcgctccccagatgagatggagctggaagatggctctgggctctttgttgctcaggct
ggaggagctgacccagataaataccagggggtgattgcggatttgaagctgcgaggggac
ccgcgggcggctgagcgccagtgcgaggaagaggaggatgacaccgaggaggtctctggc
gatttcggcagtggagcagaaggtggacaccagccctcagggaaagacaggggtgtccca
gggctggtggatgctgtccccgtcacctctccccctgtggcagcaggcgggggggtgagg
agtggcgggggctccctgcagcaagcggagaggaccagagcagaggaaacattgcgggtc
tctgctggaggcaccggcccaaaaggtgagaagggggagaagggcgagcggggcctgaaa
ggggactcggggaccggcagcatcgtggggacaggcagcatcaagggtgaaaagggggag
aaaggtgaagtgggcattaagggcagtgccggatttggctatcctggctccaagggccag
aaaggggagccgggtgaccccggttcccccaggaccctctcacggcatgctgatggctca
gtggtggagcagatcactggtcccccggggccaccaggcaaggacggagcccctggcagg
gatggagagcctggcgatcccggcgaagatggcaaacctggtgccatggggccccagggg
ttccccgggatgccaggggagcccgggctgaagggggagaagggtgacccaggtgtgggg
ccaaggggaccccctggaccacccggtcccccgggaccaccaggaccctcctccaagcat
gacaagctgaccttcatcgatatggaaggctctggctttggcggtgacctggagagcctg
cagggtccacgagggccacccggtcccccagggccacccggtgtgcctggtttgccaggg
gagccgggacggtttgggatgaatcaaacagacctgccgggaccacctgggctgccaggc
agggatgggacccccggatccccggggccagcgggtcctcagggtccttctggaagagac
ggggcacctgggcagccagggcccaaaggagagcggggtgatgtgggtgacctcggcctc
cccggtgcaccaggacccaagggcagcaagggagaaacaggaccagcaggagccccagga
gaaacggggttagctggccttcctgggcccatgggaccccgagggccaccaggacccccc
ggtcccccgggaccaccagggcctggctatgaggctggatttagtgacatggagggctca
gggctgccattcgctgccagctcccctggacaacctggacctgaaggaccacagggtgtg
ccaggactgccagggatgaagggggaggtgggcagccctgggcagcccggcttgccagga
ccgaagggggatgctggtgtgccaggtgtggatggtcgccctggcctggagggcttccct
ggaccgcagggacccaaaggtgacagaggcagccctggagagaagggtgagcgaggccaa
gatggtgtggggctgcctggccctcccggtccacctggtccccctggacaggtcataact
gtctcgagtgaagatagatctttggtggctttgcccggtccagagggcagaccaggtcac
gctggcttcccgggcccactgggaccgaaaggagatcaggggccatctggtccacagggc
cccccagggttgaagggggagaaaggggagcccggtgtcatcatcagccccgatgggact
gtggtcactgcaaaggtgaaaggagaaaagggagagccgggactgcggggaccagtgggg
ccctcgggtcccccgggaagagcagggatgaagggagagatcggctttccaggcagacct
ggacgtcccggcatgaacgggctgaagggtgagaagggtgaccctgcggatgtcagcagt
gtcctgggcttgcggggtcccccaggacccccagggcccccaggcccccccggcccacct
ggcagcgtagtctacgacagcagcaatgccttcagcgattctggccgtcccgtgctgcca
gcgttccctggtttccaccagtttccaggacaaaagggagagaaaggcgataccggagcc
ccaggacccccaggccactttccctatgacttgagtcactttggtgccagcctgcggggt
gacaagggggatgcaggtcccaagggtgagaagggtgagccaggcagcaccccactctat
ggtcccagtgtctccgggctgccagggccaccagggccccagggctaccccgggctgccg
ggtcctaagggggacagtatcgttgggccgccgggacctcctggacctcagggtccccct
ggtattggatatgaggggcgacagggcccccctggccctcctggtccccctggtccaccc
tccttcccaggcccccacagacaagctatcagcatccctggcccccctggaccaccggga
ccccctggaccaccaggcaccagcgggatgtccttgggggtgacgcgtcccctgccgacc
taccaggcgatgctgagcgccgcacacgagctgcccgagggcagccttgtcttcctgact
gaccggcaagaactctatgtccgcctgcgcgggggcttccgcagggtgctgctggaggag
cacaccctgatccccagctcggctttggtgagttccctgtcctccatccatccatccatc
caaccctccatctccaaccattcccgtccccaaccctccatctccaaccattcnccccca
cccaccgcccggccctggcgtggggatgaggtggtggccaaccagcaccgcctgcctgag
caacccctgctccaccaccagcacgagctccttaacagctactacatccaccgccggccg
gatccggcccccgtagctgcctacgtgcaccaggacttccagcccgctcttcacctggtg
gccctgaacacgccgctgagcggcagcatgcgtggcatccgcggtgccgatttccagtgc
ttccagcaagcccggcaggtcgggctggctggcaccttccgtgccttcctctcctcccgc
ctgcaggacctctacagcatcgtgcgcagggccgaccgtgctgccgtgcccatcgtcaac
ctccgggacgaagtgctcttcagtaactgggaagcccttttcacgggcagcggggcccca
ctgcgagctggtgcccgcatcctctcctttgacggccgggatgtcctacgggatgcagga
tggccccagaagagtgtctggcatggctcagatgccaagggccggcgcttgcccgagagc
tactgcgagnnacaaatcccagccactggccaggcctcctcgctgggctccggcaagctg
ctggagcaggtggccagcagctgccagcacaacttcatcgtcctctgcatcgagaacagc
ttcatgactgctgccaaaaagtga
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integrated database retrieval system
