Columba livia (rock pigeon): 102088889
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Entry
102088889 CDS
T02912
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102088889 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clv03021
]
102088889 (PCF11)
03019 Messenger RNA biogenesis [BR:
clv03019
]
102088889 (PCF11)
Transcription machinery [BR:
clv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102088889 (PCF11)
Messenger RNA biogenesis [BR:
clv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102088889 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
INCENP_ARK-bind
Motif
Other DBs
NCBI-GeneID:
102088889
NCBI-ProteinID:
XP_005510794
UniProt:
A0A2I0M103
LinkDB
All DBs
Position
Unknown
AA seq
1632 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESAAPTSGASTPPTVPEMQKNL
TQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTVASVPAPSKQHM
SPTPHMTVKPPHPTTVQSEKIKPSPSPPLHDIKIVNRDPRLNRMTQHSSHAKDQSHRKEF
PPNATSQSDSKANKTQAEKQNSTKQEKLKSSEKTQKKELDQSEAKSKSPSPLKNKLPGTK
DTKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEETVKEKRRNTEKKEKDEHKTGEHRP
VGSRNKIVNGAVQKQDTTTEESEKQGGKQGRTSNRKRSRSRSPKARSPSTHSPKRRERRS
PKRRLRSLSPTSSTPKIGKIRQIGPKQSHAEEGTQAARDERNSNKRNAKQEVRDPRRVKK
AQEDRPQEAASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQNEEHQASKSPH
QRHRENWPAGKGVLSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTSGEITQ
DEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAKLKRTQ
VQHSLSRTDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFDRKEPFGERSRRHSPVSG
TNRPFAENLSPLESRRRLEEQNATKGTRGSKNFDHYDSWAESDELRDALRQQGKSTTEFQ
KIDGDAIGRFDNREERQLLGKSGIREEPRSPFSERFKRARYEDPEKAPFPESPGSRFGAV
EAKQRISALMEERPLFDGSPRPAAARVAVDGPGSPFGDGPAAGSSSRIDGPPGQAAMRFE
GPLVGAGASQFDGPLAGTGAAGALRFDGPPGQLAGALRFEGPPGQVAGGGPLRFEGPLGQ
IGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPLGPRGQPGGGL
RFDGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGPSGAGLRFEGPHGQPIGPHGPSGAGL
RFEGPHGPSGAGLRLDGPHGQPGVGPRLIDGPIHQGAGGLRFDGPLGRAGPRFDGCHAAG
FDGQPGQLSFLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQRFDGPHQPASRFDLPLG
LQGARFENVANHPAPRLEMSPYGQGGPFVDHPGQGFNGPSHGMQFQRPDLFDGSAGPNFN
GPAGPGAQNFPLRAAGHYFEEKGLQGPQYGNFNNMPMGSNQVSLMSGQPGPYGQGQQYLP
NPGSFVQNPAGTLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQANETSAQPG
AEEDDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADH
LDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQ
EAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYED
YQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETEEPCDPPKIKEEPDDTPTACAEESTPA
SAEIKTEPEESV
NT seq
4899 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcgacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacctgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
gctgcacctacctctggtgcctctactcctccaaccgttcctgaaatgcaaaagaatttg
acacaggagcaactgatcaggcagcaattgcttgcaaagcaaaagcagttgttagaactt
cagcagaaaaaattagagctggagctggaacagactaaagcacagttggctgtatctctt
agtgttcagcaaggatcgtctactgtagcttcagttccagcaccttctaagcaacacatg
tctcccacacctcatatgacagttaaaccacctcatccgactactgtgcaatctgaaaaa
ataaaaccatccccaagtcctccacttcatgatatcaaaatagtaaatagggatcctcga
cttaataggatgactcaacattcttctcatgctaaagatcagtctcataggaaagaattt
ccaccaaatgcgaccagtcagtctgatagcaaggcaaacaaaacgcaggctgaaaaacaa
aactcaacaaagcaagaaaaattgaaatcgagtgaaaaaacccagaagaaggaacttgac
cagtcagaagcaaaatctaaatcaccatcgcctttgaaaaataagctgcctggtactaaa
gatactaaaacccaggaatgtgaaagcacaaaagtatctgaaattagtaagcgggatcca
agactgaaaagacatcttcaagataagtcagagggcaaagaggaggagacggtgaaagaa
aagaggagaaatacagagaaaaaagaaaaagatgaacataagactggtgaacatagacca
gtaggcagcagaaataaaatagttaatggtgcagtgcagaaacaagacacgactacggag
gagtcagaaaaacaaggtggaaaacaagggagaactagtaatagaaaaaggtcgcgatca
cgttctcctaaggcacggtcaccatctacacactctccaaaaagacgagagaggagatcg
ccaaaaagaagactgaggagtttatctcccacttcttcaactcctaaaataggaaagata
cgtcagataggccctaagcagtctcatgctgaagaaggcacgcaagcagcaagagacgaa
cgaaattccaataagagaaatgctaaacaagaggtgcgagatccgaggagagtgaaaaaa
gcccaagaagataggccccaagaagcagcaagccagcattctacaaaagcttctccagat
ccgaaggagaatgcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggt
tgggaagaaaacaaaaactcacagcagaatgaagaacaccaagcaagtaaatcccctcac
caaagacaccgggaaaactggcctgctggtaaaggagttttgtcaccccgagcaccaaag
cagcagcaccggttaagtgtggatgccaatttacagattcccaaagaattgacatctgca
agcaagagggagttacttaagaaggccaatgaacgcttaacatctggtgaaataacacaa
gatgagttcctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaaa
caccggtgtaatgtctgggatagcccgacagaggaaaaatgtggtttgaagaagaaacct
cttctatcggatgcggaattaacatattatgaacataaggctaaactgaaaaggacacaa
gttcagcattcattgtcaaggactgatctgttggatcccgatgatatcttggattatcat
ttacctgatgccttgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagta
cagtttgacagaaaggaaccatttggagaaaggtcacggagacactctcctgtaagtggc
actaatagaccttttgctgagaacctttcaccacttgagagtcgacgaagacttgaggaa
caaaatgctactaaaggaacaagaggttctaagaacttcgatcattacgacagctgggca
gaatcagatgaattgagagatgcccttagacaacaggggaaaagcacaacagagttccag
aaaatagatggtgatgcaattggcagatttgataatcgtgaagaaaggcagcttcttggg
aaatctggtattcgagaggaaccaagatcaccattcagtgaacgtttcaaaagagctaga
tatgaagatccagagaaagccccatttccggaaagtccaggatcaagatttggagccgtt
gaagcaaagcagaggataagtgcgctcatggaagagagacctctgtttgatggctcacct
aggccagctgctgcaagggttgcagtagatggaccaggaagtccttttggtgatggacct
gctgctggttcaagttccagaattgatgggccacctgggcaggctgctatgagatttgaa
gggcctttggtgggggcaggtgcatctcagtttgatggaccactggcaggaactggggca
gctggagccctaagatttgatgggccaccagggcagctggcaggagccctgaggtttgaa
ggacctccaggacaggttgctggaggaggtcccctgaggtttgagggacctcttgggcag
ataggtgggcctctgaggtttgaggggcctgcagggcagccagtaggtggtcctagattt
gaaggacctggagttggtctcaggtttgagggtccccgtggtcagccttcaggtggcctc
aggtttgaaggccctcatggtcaacctctggggcctcgaggtcaaccagggggtggtctc
aggtttgatggaccccatggtcagcccttggggcctcatggtcaaccagggggtggtctc
agatttgaggggccacatttacagccattggggccacatggaccatcaggtgctgggctc
agatttgaggggccgcatggtcagcctatcgggccacatggaccgtcaggtgctgggctc
agatttgaggggccgcatggaccatcaggtgctgggctcagattggatggaccacatgga
cagccaggtgtaggtcctaggttgattgatggaccaatacaccagggagctggtggactt
agatttgatggtcctctgggtcgagctggtccaagatttgatggttgccatgcagctgga
tttgatggccaacctggtcagctgtctttcttgcaaagatttgatggaattcatggacag
cctgggccgagattcgaaagggcgcctggccaacaggcacaaccacgatttgacacagcc
atacctcaaagatttgatggacctcaccagccagcctctagatttgacttgccccttggc
cttcaaggtgcacgttttgaaaatgtagctaaccatcctgccccaagactagaaatgtca
ccatacggacaaggtggtccatttgttgaccatcccggccagggcttcaatgggccgtct
catgggatgcagttccagaggcctgacttatttgatggttcagctggaccaaatttcaat
gggccagctggcccaggagcacagaatttcccactgagagcagctggacattacttcgag
gaaaaaggtcttcaaggtcctcaatatggaaacttcaataatatgccaatggggagcaat
caggtttctctcatgtctggtcaaccagggccttatggccaaggtcaacagtatttgcca
aatcctggaagttttgttcagaaccctgcaggaacccttccacattcatatcctgataac
caccttgggcagcttgatgtcaatgaattatttgctaaactgctgtcaacaggcatcctc
aaactgtcaaaaactgattccacttcagcacaagcaaatgaaacatcagcccaaccaggt
gctgaagaggatgatgatgaccagaatgaagatcagaatgttccagacctcactaacttc
atagttgaagaacttagacagcgttatgatagtgtaataaatcgactgtacactgggatt
cagtgttactcgtgtggaatgagattcactacttcacagacagatgtgtatgcggatcat
ttagactggcattaccgtcagaaccggacagaaaaagatgttagccgaaaaattacacac
agaagatggtactacagtttaacagactggattgaatttgaagaaatagctgacctagag
gaacgtgcaaagagccaattttttgaaaaagctcatgaagaggttgtgttgaaaacacaa
gaagctgcgaaagagaaggaatttcagagtgtccctgctggaccagctggagcagttgag
agctgtgaaatttgccaagagcaatttgaacagtattgggatgaggaagaggaagagtgg
cacctgaagaatgctatcagagtagatgaaaagatttaccatccatcttgctacgaagat
taccaaaatacatcatcatttgattgcacgccatctcccagcaagactcctgtagaaaat
ccactcaatataatgttgaacattgttaaacaagaaacagaagagccctgtgacccacct
aaaatcaaagaggagcctgatgacaccccaacagcctgtgcagaagagagcacacctgcc
tctgcagagataaaaacagaacctgaggagtctgtttaa
DBGET
integrated database retrieval system
