Columba livia (rock pigeon): 102092129
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Entry
102092129 CDS
T02912
Symbol
DROSHA
Name
(RefSeq) LOW QUALITY PROTEIN: ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102092129 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clv03019
]
102092129 (DROSHA)
03009 Ribosome biogenesis [BR:
clv03009
]
102092129 (DROSHA)
03036 Chromosome and associated proteins [BR:
clv03036
]
102092129 (DROSHA)
Enzymes [BR:
clv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
102092129 (DROSHA)
Messenger RNA biogenesis [BR:
clv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
102092129 (DROSHA)
Ribosome biogenesis [BR:
clv03009
]
Eukaryotic type
90S particles
RNase
102092129 (DROSHA)
Prokaryotic type
rRNA processing factors
102092129 (DROSHA)
Chromosome and associated proteins [BR:
clv03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
102092129 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
YcaO
Cro
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
102092129
NCBI-ProteinID:
XP_021153688
LinkDB
All DBs
Position
Unknown
AA seq
1326 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGTRTSTQTYRPQNLRQLHPQQPSVQYQYDQQTAPPTTYSNPPTT
GYMPPRPDFVPYPPPVPPSTQNPISQCPVRPPFPNHQMRQSFPVPPCFPPAPPPVPNPSN
APVPGTPXXXXXXXXTVPHPPPPPVIPQQVNYQPMYSTGYSQQSFPPPTFNSYQHSSGSF
QSSAXPSHFRHTGQYQGEKSQSDRRSPERSKHYDDHRHREHSHIHADRHRSTNHGDRRDR
GRSPDRRRQESSRHRTDYDRGRISPHHRSYERNRERERERHRHRDSRRSLSPDRSYKKDY
KRAGSRSPSRERKRPRWEEDRERWSENQSSSKEKNYTAIKDKESEENASEKNEEEDEELL
KPVWVRCTHSENYYSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAKAKAARPPWEP
PKTKLDEDLESSSDSDCDSEDDSSCSSSSDSEVFDVIAEIKRKKAHPDRLHEELWYNDPG
QMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITVSPPTNFLTDR
PTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVRGLELF
SSYLFKDILELYDWNLKGPSLENDSVCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLR
CSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDREQFNPDVIT
FPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLSQREEALQKI
RQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMHLDKLIGYTFR
DRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINI
MSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQH
LAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLL
FNDKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAF
TLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQA
KVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPR
LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGER
IGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQEREPDE
TEEARK
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctggccgaggatgtccccgtggtcaagggggaccaggaacaagaact
tcaacacagacctaccgccctcagaacctacggcagcttcacccacaacagccctctgta
caataccagtatgaccagcaaactgcccctccaacaacctattcaaaccctccgaccact
ggttacatgcctcccaggccagactttgtgccctatcctcctccagtgcccccttccaca
caaaatcctatcagccagtgtcctgtgaggccaccatttccgaaccaccagatgaggcag
agcttcccagtgcctccgtgcttccctcctgctcctccacctgtgccaaatccgagcaat
gctcctgtgccaggaactcctnnnnnnnnnnnnnnnnnnnnnnccacagtaccgcatcct
cctcccccaccagtcataccgcagcaagtcaactaccagcccatgtactccacagggtat
tcacagcagtctttcccaccgcccaccttcaatagctatcagcacagctctggctctttt
cagagcagcgcgncccccagccacttccggcacacgggtcagtaccagggagagaagtca
caaagtgatcggcggtccccagagagaagcaagcactatgatgaccaccgacatcgtgaa
cacagtcacatccacgctgacaggcatcggtccactaaccatggggatcgtcgggatcga
ggccggagtccggataggagaaggcaggaaagcagtcggcaccggaccgattatgataga
ggaaggatatcgcctcatcacagaagttacgagcgtaacagggagcgggagagggaaagg
cataggcaccgtgacagcagaagatcactgtcaccagacagatcctacaagaaagattac
aagagagcaggaagccgttctccaagcagagagagaaagagaccccgatgggaggaggac
agagaaaggtggtctgagaaccagagctccagcaaagagaaaaactatactgctatcaaa
gacaaagaatcagaggagaatgcatctgaaaaaaatgaagaggaagatgaggaattactt
aagccagtctgggttcgctgtacccattctgaaaactattattccaatgaccctatggat
caagtgggtgattctactgtggtaggaacaagcaagctccgagatctgtatgaaaagttt
gatgaggagttaggaaagcgacaggcaaaggccaaagcagccaggccaccatgggagcca
ccaaagaccaagctggatgaagacttagagagctccagtgactcagactgtgactctgaa
gatgacagcagctgctctagcagttcggattcagaagttttcgatgtcatcgcagaaatt
aagcgtaaaaaagcacaccctgatcgtctccatgaagaactgtggtacaatgatccagga
cagatgaatgatggacctttgtgcaagtgtagtgctaaagcccgacgaacaggcataaga
cacggcatttatcctggtgaagagcccattaaaccatgtcgccccatgaccaacaatgct
ggaagactgtatcattatcgaattactgtgtcacctcccacaaacttcttaacagacaga
cctactgttattgagtatgatgaccacgaatatatctttgaagggttctcaatgtttgca
cacgccccactaacaaatattcctctatgtaaagtaatcagatttaacattgactataca
attcatttcattgaggagatgatgcctgagaatttttgtgtgaggggtcttgagctgttc
tcttcatatctattcaaagatattttggagctctatgactggaatcttaaaggtccttca
cttgaaaatgattctgtttgctgccccagatttcacttcatgccacgatttgtgagattt
cttccagatggagggaaagaagtactctcaatgcatcagattcttctctacttgttgcga
tgcagtaaagctctggtgcctgaagaggagattgccaacatgcttcagtgggaagaactg
gaatggcagaaatatgcagaagaatgcaaaggaatgattgttaccagccctggcatgaaa
cccagctcagtgcgtattgatcaactggaccgcgaacagttcaatcccgatgtaattact
ttccccattattgtccactttgggatacgacctgctcaactcagttatgctggagatcct
caataccaaaagctgtggaagagttatgtgaagctgcgtcacctgctggctaatagtccc
aaagtcaaacaggctgataaacagaaattatcacaaagagaggaagcactgcagaaaatt
cgtcagaagaacacaatgagacgtgaagtgaccgtcgagttgagtagccaaggtttctgg
aaaacagggatacgctctgacgtctgccagcacgcaatgatgcttcctgtccttacccac
catgtccgctaccatcagtgtctgatgcatttggacaaattgataggctacacttttcga
gacaggtgtttgctgcagcttgccatgactcatccaagccatcacttaaactttggaatg
aatccagatcatgctagaaattccttatccaactgtgggattcgacagccgaagtatgga
gatagaaaagttcaccatatgcacatgagaaaaaaaggcataaacaccctgataaatatc
atgtcccgtttgggacaggatgatccagctccttccaggattaaccacaacgagcgttta
gaatttctgggagatgctgtcgtggagttcttaacaagtgtccacttgtactacctgttt
cccactctggaggaaggaggattagctacgtaccgcactgccatcgtgcagaaccaacac
ctggccatgttggctaagaagctggagctagatcggtttatgctttatgctcatggtcca
gacctttgcagggaatcggatctccgccatgcaatggccaactgctttgaagccctaata
ggagctgtttatctagaggggagtctagaagaagcaaagcaattatttggacgtttactc
ttcaatgacaaggacctgcgggatgtatggcttaattatccactacacccactccaactg
caggagtccaacactgacaggcaactcattgagacctctccagttcttcagaagcttaca
gagtttgaggaggcaattggagtaatctttactcatgttcgtcttctagcacgtgcattc
actctgaggacagtaggctttaaccatctgactctaggccacaaccagaggatggaattc
ctgggtgactccataatgcagttggtagccacagagtatttattcatacatttccctgat
catcatgaagggcacttaacgctgttgagaagttctttggtaaacaacaggactcaggcc
aaggtggcagaagagctgggtatgcaagaatttgccatcactaatgacaagacaaaaaga
cctgtagctcttcgaactaagactttggccgatctcttggaatcctttattgctgccttg
tacattgataaagatttggaatatgttcacactttcatgaatgtatgctttttcccacgt
ctaaaggaatttattttaaatcaagattggaatgatcctaaatctcagcttcaacagtgc
tgcttgactctcaggacagaaggaaaagagccagacattcctctttacaagactttgcag
acagtgggaccatctcatgccagaacatacacagtagctgtttacttcaaaggggaaaga
ataggatgcggtaaaggcccaagtattcagcaagcagaaatgggagctgcaatggacgca
cttgaaaaatataactttccccagatggcccatcagaaacgcttcattgaacggaagtac
agacaagagttgaaagaaatgaggtgggaaagagagcaccaggagagagagccagatgag
actgaagaagcaaggaaataa
DBGET
integrated database retrieval system
