Columba livia (rock pigeon): 102092441
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Entry
102092441 CDS
T02912
Symbol
USP42
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
clv01002
]
102092441 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clv04121
]
102092441 (USP42)
Enzymes [BR:
clv01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
102092441 (USP42)
Peptidases and inhibitors [BR:
clv01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
102092441 (USP42)
Ubiquitin system [BR:
clv04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
102092441 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
102092441
NCBI-ProteinID:
XP_005514962
LinkDB
All DBs
Position
Unknown
AA seq
1374 aa
AA seq
DB search
MTIVNKPKSSKSKKSSSRRSDKSKKPRTKKMTSRTANLGRVPPAEDPNKVSVDKGPGGAI
YCRSSQKSKPFAQRDLVVNDGIAPPQRILFPPEKICMDWQQTQSVGVGLQNLGNTCFLNS
TLQCLTYTPPLANYMLSLEHTQSCHVEGFCMMCTMETHINQVLCCSNNAIKPTSVINGLK
RIGKHFHFGSQEDAHEFLCFTVDALQKACLNGSNKLDRSSQATTLIYQIFGGYLRSRVKC
LNCKAVSDTYEPFLDITLDIKAVTSVTRALEQFVKPEQLDGENSYKCSKCKKMVPASKRY
TIHRSSNVLTISLKRFANFTGGKINKDVKYPEYLDLRAYMSQSIGEPLIYALYAVLVHSG
FNCNAGHYLCFIKAGNGLWYRMNDASVELSDIKTVLTQQAYVLFYIRRYDLTLGERAFYL
PAPSYPRPFLGQRGANSKQAGFMGPRLPPHMIKNSNRLNGNGPLKEDPNTVGVTLKRPSS
APPTACVQNWAITRPAMADPSKSQKITISIHNKLPARQTVSQPSCLSSAAEDEDPSKPAP
SSTITNSSAAESTSNASTVSVATNISKPEVPDEMFVEPTVNGNPNLGSDNAVPYSAESSG
KPEDSKGLFKRNCSLISSNGLLIGKVVRTLQNSHSSCPNTEEERCPQDLPKNDSVNGAIS
LDKESKENGLKLNDSTCQVPPVKPSEIFFSKTNGLLETMPVALSPVPQDIILESLTYSQL
NNLSEEISVPGPLKSSENDALMETVVMEALFSYEENRKVPSAFRPEVENLLTQPNSETTA
AKEDVTESIIPRADNAHPNINGQHKVRKKSVDAADEFLGQCESGDPRDKDKPRRSKEPEL
VSKENPLYIRGSPESEEKLGQTSSIKSDIECSSKKLASLDITEKCQDTKDISNNYVEVPP
VNDSSITKLDKVLESQFSRGNEGLGNKKCEEDKHRKKYKKKIYDSKKTDKEHYRKKREYS
DTEEREKEKQTRGKADDHSHKRRCSRSVETNRQNRHKQEYCNESKYRSSHNERNSPNNGK
SSGKYSRYRSRSRERTEQERNRYYYSKGERTWSRERYYQDQPRRWEKCRYYNDYYSSHGA
RDGRERRSSYCDKDFDKSSQAFNSRSHQDYQGKSRWAHGALARGDDAPHCSGHRANPYHG
SAPPQQPPKXPPGQAELCWEKEKPRAGKRRPSPAEGGGDTQRKCRRVDDQRTKKYKKVKK
KKKSKDKHREKDDKLYDLDFSVLRFDNDNHKHKKKKKKKKHIRKLKGYLEYLDPHFQKKT
REKKEDSSPPGSYFREQYGGQGSQQPCEGSARAGEGERRSALPAEGPTDADLPSEHAEFT
VLDPADDASQFNTWRVRSSLTETFTAPATATTKPSNPLPSTPTAFYHPTQHYQY
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttaacaagccaaaatcttcaaaatctaaaaaatcgtcatcgaggcggtct
gacaaatctaagaaaccccgtactaagaaaatgacatcacgcaccgcaaatttgggccgg
gtaccacctgcagaagatccaaacaaagtctctgtggacaaaggacccggaggtgctatt
tattgtagatcatctcagaagtctaagccttttgcccaaagagatctagttgttaatgac
ggaattgccccgccacaaaggattctttttccacctgagaaaatctgtatggattggcaa
caaacgcaaagtgtcggagtcgggctgcagaacctcggcaacacgtgtttcctgaactcc
acgctgcagtgtctgacctacacgcctcctctcgccaattacatgctctcgctggagcac
acgcagtcatgtcacgtagaaggattttgtatgatgtgcactatggaaactcacattaat
caggtcctgtgttgctctaataatgccatcaaacctacatccgttatcaatggccttaaa
agaataggaaaacatttccattttggcagtcaagaggatgcacatgaattcttatgcttc
actgttgatgctttgcagaaagcctgtttgaatggaagcaacaaattagacagatcttct
caagccaccacacttatttatcaaatatttggaggatatctaagatcccgagtgaagtgc
ttgaactgcaaagcagtttcagatacgtacgagccattcctcgatattactttggacata
aaggcagttacgtctgtcacccgcgcgctagaacagtttgtgaaaccggaacaattggat
ggtgaaaatagttacaagtgcagcaagtgtaaaaagatggttccggcgtcaaagaggtac
acgatacatcgttcttccaatgttctcacaatatcactgaaaagatttgcaaattttaca
ggtggaaagatcaacaaggacgtaaaatatcctgaatatttggatcttcgagcatatatg
tcccaatcaataggagaaccactcatctatgcgttatatgcagttcttgtacatagtggc
ttcaactgcaatgcaggacactatctctgtttcataaaggctggtaacggactttggtat
agaatgaatgatgcatcagtagaactttctgatatcaaaacagttctcactcagcaagct
tatgtacttttttatatcaggcgctacgatctgaccctcggagaacgcgcgttttattta
ccagctccgtcttatccccgtccgttcctcggtcagcggggggctaatagtaaacaggcc
ggatttatgggaccacgacttcctcctcatatgattaagaattcaaatcgtttaaatggg
aacggacccctgaaagaggatccgaataccgtgggggtcaccctgaaaagaccgtcctcc
gctccgcccacggcctgtgtgcagaactgggccatcaccaggcccgcgatggccgacccg
tcgaaaagccagaagatcactatcagtattcacaacaagttacctgcacgtcagactgtg
tcacaacccagctgtcttagcagcgctgcggaggacgaggacccgagcaagcccgctcct
tcttccaccatcacaaattcctccgcagccgagtctacctcaaacgcatctactgtgtcc
gttgctactaacatttccaagccagaagttcccgatgaaatgtttgttgagccaacagtg
aacggaaatcccaacctgggctcggataacgccgtcccgtacagcgcagaatcctcggga
aaacctgaggactcgaagggcttgttcaaaaggaattgcagcctaatatcttctaatgga
cttctgatcggaaaggtggtccgtacattgcagaattcccattcttcctgtcccaacacc
gaagaagaaagatgcccacaagatctgccaaaaaatgattcagtaaatggtgctattagt
ttagataaggaatctaaagaaaatggactgaaacttaatgattcaacttgccaagtccca
cctgttaaaccttcagagattttcttctctaaaacaaatggactgcttgaaacaatgccg
gtagctctgtcaccagttcctcaagacataatcttagaatcacttacctatagccagctg
aacaacttgtcagaagaaataagtgtccctggacctctgaagtcttctgagaatgatgct
cttatggaaactgtagtcatggaagcactgttttcctatgaagaaaacaggaaagttcct
tctgcctttaggcctgaggttgagaatcttctcactcaaccaaactctgaaaccactgct
gccaaagaagatgttactgaaagtattataccaagagctgacaacgcgcatcccaacatc
aacggtcaacataaggttagaaaaaaatccgtggatgcagcagatgaattccttggtcag
tgtgagtctggagaccctcgagacaaagacaaaccaagaagatcaaaagaacccgagctc
gtttcaaaagaaaatcccttgtacatcagggggtctcctgagagcgaagagaaattaggg
caaacttcctctatcaagtctgacattgaatgtagttctaaaaaacttgcatctctagat
attacagaaaaatgccaagacacaaaggacatttctaacaactacgtggaggtaccacct
gtcaatgactcctccattacgaagctcgataaagttttggagagtcaattttctagagga
aatgagggactgggtaataaaaaatgtgaagaagataaacataggaaaaagtataagaaa
aaaatatatgactctaaaaaaactgacaaagagcactaccggaagaagagagagtactcg
gacaccgaagagagggagaaggagaagcaaacccgaggcaaagcagatgaccattcccac
aagaggaggtgctctcgcagcgtggaaacaaataggcaaaaccgccataagcaagagtat
tgcaatgagagcaagtacagatcttcccacaacgaaagaaacagtccaaataatggcaaa
agctcaggaaaatattctcgttatagatcccgaagcagagaaagaacagaacaagagcgg
aataggtattattattccaaaggagagagaacttggagcagagaaagatactatcaagac
caaccgcggagatgggaaaaatgcagatactacaacgattattattcgtctcatggagcg
agagacggtagagagagaaggtcctcttactgcgataaagactttgacaaatcgagtcaa
gcgttcaacagccggtcgcaccaggattaccagggcaagagccgctgggcccacggcgcg
ctggcccgaggggacgacgccccccactgcagcggccaccgggcaaacccgtaccacggc
tcagcacccccgcagcagcccccgaaancacccccgggacaggcggagctgtgctgggag
aaggagaagccccgggccggcaagagacggcccagccctgcggagggcggcggcgacacc
cagaggaagtgccgcagggtggatgaccaaagaaccaaaaaatacaagaaggtcaagaag
aaaaagaagtccaaagataaacaccgagagaaggatgacaaactctatgatctggatttc
tctgtgctccgctttgacaacgacaatcacaaacacaagaaaaagaagaaaaagaagaaa
cacatcaggaaactgaaaggctacttggaatatttagatccccatttccagaagaaaacc
cgggagaagaaggaagactccagtcctccgggcagttacttccgtgagcagtacggcggc
cagggcagccagcagccctgcgaggggagcgcccgcgccggggaaggcgagcgccgcagc
gccctcccggccgagggcccgacagacgcagatctgccttctgagcacgctgaattcaca
gtccttgaccctgcagacgacgcttcgcaatttaacacctggagagtgcggagctcgctg
acggaaaccttcactgctccagccacagcgaccaccaaacccagcaaccctctgccatcg
acacccaccgccttttaccacccaacccaacattaccagtactga
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