Columba livia (rock pigeon): 102093186
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Entry
102093186 CDS
T02912
Symbol
SHH
Name
(RefSeq) LOW QUALITY PROTEIN: sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
clv
Columba livia (rock pigeon)
Pathway
clv04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
102093186 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
clv01002
]
102093186 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clv00536
]
102093186 (SHH)
Peptidases and inhibitors [BR:
clv01002
]
Cysteine peptidases
Family C46: hedgehog family
102093186 (SHH)
Glycosaminoglycan binding proteins [BR:
clv00536
]
Heparan sulfate / Heparin
Morphogens
102093186 (SHH)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
102093186
NCBI-ProteinID:
XP_013227640
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADAEGRLLYSD
FLTFLDREDSSHKLFYAIETRQPRARLLLTAAHLXXXXXXXGDPXSSQALFASRVRPGQQ
VYVLGEGGQQLLPAAVHSVSLQEEASGAYAPLTAQGTILINRVLASCYAVIEEHSWAHWA
FAPFRLLQGMLDVLCPSGGGRLVGAPATXXXXXXLYRIGSWVLDSDSLHPLGMVVPSS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgccctggcgatctcggtgatgaaccagtgg
cccggggtgaaactgcgagtgaccgagggctgggacgaggacggccaccactccgaggag
tccttgcactacgagggccgcgccgtggacatcaccacttcggaccgggaccgcagcaag
tacggcatgctggcccgcctggccgtcgaggccggcttcgactgggtctactacgagtcc
aaggcgcacatccactgttccgtcaaagcagaaaactcggtggcagccaaatcgggaggc
tgcttccctggctcggccacggtgcacctggagcacggtggcaccaagctggtgaaggac
ctgagccccggggaccgcgtgctggcagctgacgcagagggacggttgctctacagcgac
ttcctcacctttcttgaccgggaggacagctcccacaagctcttctatgccattgagaca
cggcagccccgggcccggctgctgctgacggctgcccaccttcnnnnnnnnnnnnnnnnn
nnaggggaccccnncagcagccaggcgctcttcgccagccgcgtccggccgggccaacag
gtctatgtgttgggcgagggcgggcagcagctcctgccggcggctgtgcacagcgtctca
ctgcaggaggaggcttcgggggcctacgcccccctcaccgcccagggcaccatcctcatc
aaccgggtgctggcttcttgctacgccgtcatcgaggagcacagctgggcgcattgggcc
ttcgctcccttccgcctgctccaggggatgctggacgtcctgtgcccctccggcgggggg
aggctggtgggggcccctgccacnnnnnnnnnnnnnnnnntcctctaccgcatcggcagc
tgggtgctggatagtgactctctgcacccgctgggcatggtggtaccatccagctga
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