Columba livia (rock pigeon): 102093442
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Entry
102093442 CDS
T02912
Symbol
CNOT1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102093442 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clv03019
]
102093442 (CNOT1)
Messenger RNA biogenesis [BR:
clv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102093442 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102093442 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
102093442
NCBI-ProteinID:
XP_005504847
LinkDB
All DBs
Position
Unknown
AA seq
2369 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LSTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQTDLSQVWPEANQHFSKEID
DEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQY
PDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRFKNRL
KDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQ
VPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVATDQT
ERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNF
HSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLA
KNKPILHTDLDVKSLLLEAYVKGXXXXXVPFVAKVLESSVRSVVFRPPNPWTMAIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPKKDVKQPE
ELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIPLFQAHP
QLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRN
LTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNCELACCFI
QKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPK
QLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQHLQSIP
HTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYREC
HLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLA
QSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGNAPEGLP
QLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAA
AGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTM
IRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQ
LPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIF
IARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFP
EFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTN
FTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLYVGTQAI
AHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCT
MLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAP
EIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7110 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgtgccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcag
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgtgcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcgggattgacagatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttctgaaagagctgaatcctagcctggatttcaaagtagttacctatgaa
ttggaccatccaggatttcagattcgtgacagcaagggcctgcatattgtagtgtttggc
atccagagagggctgggcatggaagtttttccagtgaacgccatatacagaccgtggaag
catgcagagggccagctttccttcattcaacattccctcataaaccccgacatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcctatcaaacattgc
ccagatatgctggtattggccttactgcagatcaacacgtcctggcacaccttgcgccat
gaacttatctccacgctcatgccaattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcgattcgtcagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaactgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aaaagaagatgtccatctatcctgggtggccttgctccagaaaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcgactatgctggcatgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtagccaactgcagtaatgtc
atgaacaaggctagacagccgccacccggagtcatgccaaaaggacgtccgcccagtgct
agcagcttggatgccatctctcctgtacagatcgactcgcttgcaggaatggcatctctt
agtttaggtggctcagcggctcctcacacccagagcatgcaaggcttccctccaaacctg
ggctccgccttcagtactcctcagtcaccagcaaaagcgttcccccctctttccacccaa
aaccagacaacaggtttcagtggcatcggaggactctcctcacagcttccagtaggtggt
cttagtacgggtagcctgactggcataggaactggagccctgggtcttcctgcggtgaac
aatgatccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagaccgacttatctcaggtgtggccagaggctaatcagcactttagcaaagaaatagat
gatgaggcaaacagctacttccagcgtatttacaaccatccaccacatccaaccatgtct
gtagatgaggtcttggaaatgctgcagaggtttaaggactccaacattaaacgagaacga
gaagtgtttaactgtatgctgaggaacttgtttgaggaataccgcttctttccccagtac
ccggataaagagctgcacataacagcctgcctctttggtgggatcatagagaaaggactg
gttacttatatggcattgggcctggccctgcgctatgttcttgaagccttacgaaagcct
tttgcatccaaaatgtactattttggtattgctgcactagatagatttaaaaatagactg
aaggactatccccagtattgtcagcacttggcttctattagtcactttatacagttcccg
catcatttacaggagtacatagaatacggacagcaatccagagatcctcctgtgaagatg
cagggttcaatcaccacccctggaagtattgcacttgcccaggctcaggcccaggcccaa
gttccagcaaaagctcctcttgctggccaagtcagcactatagtaaccacctcaaccacc
accactgttgcaaaaaccattacaattacccgaccgactggagtcagcttcaagaaagat
gtgccgccttccattaataccaccaacattgatacgctgttagtagcaacagatcaaact
gagagaattgtggaacctccagagaatgtccaggaaaaaattgctttcatcttcaataat
ctgtctcagtcaaatatgacacagaaggttgaagagttgaaggaaacagtgaaagaagag
ttcatgccttgggtatcacagtatctggtgatgaagagagtcagtattgagccaaatttt
cacagcttatattcaaacttccttgacacgcttaagaatccagagtttaataaaatggtt
ctgaatgaaacctacagaaatatcaaggtgctactgacatcagataaagctgcagccaac
ttttcagaccgttccttgttaaaaaaccttggtcactggctgggaatgattacgctggct
aaaaataagcccatcttgcacacggatttggatgtgaaatcgctactactggaagcctac
gttaagggannnnnnnnnnnnnnngtgccatttgttgccaaagtcttagaatccagtgtc
aggagtgtggtcttcaggcctccaaacccgtggacaatggccattatgaatgttttagct
gagctgcatcaggaacatgatctaaaattgaatctgaagtttgagattgaggtgctctgc
aagaatcttgcactagacatcaatgagctgaaacctggaagtctcctgaaagacaaggat
cgtctgaaaaacctggacgaacagctgtctgctccaaagaaggatgtgaagcagccagaa
gagctaccacccatcacaacaactactgcttctacaactccagctaccagcaccacttgt
acagccacagttcctccacagccccagtacagttatcatgacatcaacgtctattcttta
ggagggttggctccacatattaccttaaatccaacgattccactgtttcaagcccacccg
cagctgaagcagtgtgtgcggcaggcgatagagcgagcagtgcaagagcttgtccatccg
gtggtcgatcggtccatcaagattgccatgactacttgtgagcagatagtcaggaaggac
tttgcactggattctgaagagtcacggatgcgtgtggccgcgcaccacatgatgcggaac
ctgaccgctgggatggccatgattacctgcagggaacctttgctgatgagcatagctacc
aacttgaaaaatagttttgctactgcactgagggcagcctccccacaacagagggacatg
atggagcaggcggctgcccagctagcgcaggataactgtgagctggcgtgctgcttcatc
cagaagacagctgtggaaaaggcaggccctgagatggacaagaggctcgcaactgaattc
gagctcagaaaacatgctagacaagagggtcgtcggtactgtgatcctgtcgtgttaact
taccaggctgagcggatgccagaacagatcagattaaaggttggaggtgtggacccaaaa
cagctggctgtttatgaagagtttgcacgtaatgtccctggcttcttgcctaccaatgac
ttaactcagcctacaggattcctggctcaacctatgaagcaagcttgggctacagatgac
gtagcacaaatctatgacaaatgtatgacagaactggagcagcacctgcagtccatccca
cacaccctggccatgaatcctcaagctcaagctttgcgcagcctcttggaggctgtggta
gtggctcgtaactcccgtgatgctattgctgcgcttgggctactgcagaaggctgtagag
ggtttactggatgccaccagcggggcagatgccgacctcctgcttcgctatcgtgagtgt
catctgcttgtgctgaaggctctgcaggacggccgcgcatatggatctccgtggtgtaat
aaacagattactaggtgcctgattgaatgcagagatgagtacaagtacaacgtggaagct
gtggagctgctaatccgcaatcaccttgttaacatgcagcagtacgaccttcacttggct
cagtcaatggagaatggtttgaactacatggctgtggcatttgccatgcagttggtaaag
atcctgttggtggatgagagaagtgtcgcccacgtaacagaggcagatttgtttcacacc
attgagacgctcatgaggattaatgctcattccagaggaaacgctccagaagggttaccc
cagctgatggaagtggtccgatcaaactacgaagcaatgattgaccgtgctcatggaggt
cccaatttcatgatgcattcaggaatttcccaagcctctgagtatgatgatccgccaggt
ctgagggagaaggcggaatacctgctgagggagtgggtgaacctctaccattcagctgcc
gcaggccgtgacagtaccaaagcattctctgcgtttgttggacagatgcaccagcaagga
atcctaaaaacagacgacctgatcacccgctttttccgtctttgcaccgaaatgtgtgtt
gaaatcagctatcgtgctcaggctgagcaacagcacaatcctgctgccaaccccactatg
attcgagccaagtgctaccacaatctggatgcctttgtgcgacttattgcactgctagtg
aagcactctggggaggcaaccaacactgttacaaagatcaaccttctgaataaggttctc
ggtattgtggttggagttcttctgcaagaccatgatgttcggcagagtgagtttcagcaa
ctcccttaccatcgcattttcatcatgttactgttggaattaaatgctcctgagcatgtg
ctggagaccatcaacttccagacactcacagctttctgtaacacatttcacatcctgagg
cctacaaaagctccaggttttgtttatgcctggctggaactcatctcccatcggatattt
attgcaagaatgctggcacatacaccacagcagaagggttggcctatgtatgcccagtta
ctgattgatcttttcaagtacttggctcctttccttagaaatgtggaactcaccaaacct
atgcaaattctttacaagggcactctgcgtgtgttgctggtcttattgcatgatttccca
gaatttctttgtgactaccattatgggttctgtgacgtgatcccacctaactgtattcag
ctgaggaatctgatcttgagtgccttcccacgaaacatgaggcttccagaccctttcacc
cccaatctaaaggtggacatgttaagtgagattaatattgcgccacgaatactcacgaat
ttcactggagtgatgccacctcagttcaagaaagatttggattcctatctcaaaacccgt
tctccagtcacctttttgtctgacttgcgcagcaacctacaagtatcaaatgaacctggc
aaccgctacaacatccagctgattaatgcactggtgctctacgtaggtactcaagctatt
gcgcacattcacaacaaaggcagcacaccctctatgagcaccatcacccactcggctcac
atggacatcttccagaatttggcagtagacctggacactgaaggccggtacctcttcttg
aacgcaattgccaatcagctgcgataccccaacagccacactcactacttcagctgcacc
atgttgtacttgtttgcagaggccaacactgaggctatccaggagcagatcaccagggtt
ctcttggaacgactaattgtaaataggcctcatccctggggtctccttattactttcatt
gagctgataaaaaacccagcgtttaagttctggaaccatgagtttgttcactgtgctcca
gaaattgagaagttgttccagtcggttgcacagtgctgcatggggcagaagcaggcccag
caagtcatggaagggactggtgccagttag
DBGET
integrated database retrieval system
