Columba livia (rock pigeon): 102093748
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Entry
102093748 CDS
T02912
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clv03041
]
102093748 (YTHDC2)
Enzymes [BR:
clv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102093748 (YTHDC2)
Spliceosome [BR:
clv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102093748 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
AAA_19
Ank_2
HA2_N
ATPase
nSTAND3
Ank
AAA_22
PhoH
UvrD-helicase
AAA_7
AAA_23
ABC_tran
SRP54
ResIII
AAA_30
AAA_16
AAA_29
FtsK_SpoIIIE
Sigma54_activat
PBP-Tp47_a
Motif
Other DBs
NCBI-GeneID:
102093748
NCBI-ProteinID:
XP_005506269
UniProt:
A0A2I0M8V0
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MEFPSSFTSTERAFVHRLCQSLGLISKSKGKGANRYLTVRKKDGSELTHAVMICCLAPSI
KHAIRSFIQRFPVTNKERTELLPKTERGNACAVESENREVKKTSGRLNNGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKTIKENKVVLIVGETGSGKTTQIPQFILDDCSKNGTPCRM
FCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGILLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQKQPNLKLIISSAALDADLFIRYFGSC
PVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQREEKQQSTLTEWCSAQESNSK
LESQRQRSVSSAIEEYNLLDDGGDTVFTQLTEKDANCLEPWLIKEMDSCLSDIWLHKDVD
SFAQVLHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHLKSSNGWMA
LDWAKCFGQTEVVDLLESYSASVECGNADESSLVQSTGSDLSAEDRELLKAYHHSFDSEK
VDLDLIMHLLYNICHSYDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHS
NMQTLDQKKVLKSPPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEMSFDALSCVTML
KMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQSMLEFQTPELLRMPLQELCLHTKLL
APVNCPIVDFLMKAPDPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLTELPVEPHLGK
MVLCAVILKCLDPILTIACTLAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGADIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALPTDWVIYDEMTRAHRIANIRCCSVVTPVTVSLFCGPARLPSNALQEPASFRED
VVSGDNSDSEVEDKATTNLAVLKLDEWLHLRLEPEAAGLLLQLRQKWHSLFLRHMRSPSK
PWSQADETTIRAITAVLSTEEQSAGLQQPSGIGQRPRPMTSEELPLASPWGSTNSRKSSA
EMEFSDDSSIAEKVLMKSTPAALHQPKKHKEKKNLHSKRTSDDRSDQSSVKSTDSSSYPS
PCASPSSPISGKGSTSPSPRPNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNRA
FWESSMVYLIFSVQGSGHFQGFARMASEIGSEKSQDWGCAVFGGVFKVEWIRKESIPFQF
AHHLLNPWNDNKKVQISRDSQELEPQVGEQLLQLWDRIPLAGKNLTD
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccctcttctttcactagtactgaaagagcatttgttcaccggctctgtcag
tctcttggactcatatctaaaagtaaagggaaaggagcaaatcgatacctgactgtaagg
aagaaggatggctcagaactaacacatgcagtaatgatttgttgcttggctccaagtata
aaacatgctattcggagtttcattcaaagatttcctgtcacaaataaagaacgaacagaa
cttctgccaaagacagagcgaggaaatgcgtgtgctgttgaatctgaaaacagagaagtg
aagaagacaagcggacgacttaacaacggtatcccccaggttccagtgaaaagaggggaa
tcagagtttgattccttcaggcaatcactgccagtttttgaaaaacaggaagaaattgtc
aaaacaataaaggagaataaagttgttctgattgtaggagagactggatcaggaaagact
actcaaatccctcagttcattcttgacgactgttccaaaaatggaactccctgtcgtatg
ttttgcactcagccaagacgtttggcagctattgctgtggctgaaagagtggcagcggaa
agaagagaaaagattggccagacaattggttatcagatccgattagaaagcagggtttct
ccaaagacgctgttaacgttttgcactaatggcatcctgcttcgcacgctgatggccgga
gacagcactctgtcgacagtgacacatgttattgtggatgaagtacatgagagggatagg
ttcagtgacttcttgttaataaaactgagagatgttttgcaaaaacagcctaacttgaaa
ctaattatttctagtgctgctctagatgccgatctctttattaggtattttggaagttgc
ccagtaatacacatacaaggaagaccttttgaagttaaggagatgtttttggaagacatt
ttacgaagcactgggtatacaaacaaagagatggtaaagtacaaaaaagagaaacagcga
gaagaaaaacagcaaagcactcttactgagtggtgttctgctcaagaaagtaatagcaaa
ctggaatctcagagacaaagatctgtctcaagtgcaattgaagagtataatctgttggat
gatggtggtgacacagtgtttactcaactgactgaaaaagatgcgaattgccttgaacca
tggctaataaaagaaatggattcttgtctttctgacatctggttgcataaagatgttgat
tcctttgctcaggtgttacatctcattttaactgaaaatgtcagtgttgattataggcat
agtgaaaccagtgcaactgcactaatgattgcttcagggagaggctttctgagtcaagta
gaacaactgatcagtatgggagcaaacatccacttgaaatcatccaatggctggatggct
ttggactgggctaagtgctttggacagacagaggttgttgatctgttggagtcctacagt
gcttcagtggaatgtggaaatgcggatgaaagctccctagtccaaagtactggtagtgac
cttagtgcagaggacagagaactcctgaaagcttatcatcacagttttgatagtgaaaaa
gtggatctggacctgattatgcacttactttataacatctgccatagttatgatgctgga
gcgattttaatatttcttcctggatatgatgaaatagttagcctgagggaccgtattctt
tttgatgataagagatttgctgataatgctcacagataccaggttttcatgctccattca
aatatgcagactttggaccagaagaaggtgcttaaaagtccaccacctggcatccgcaaa
ataattctttctactaatattgcagaaaccagcataacagtcaatgatgttgtatttgtt
attgactcaggcaagatgaaagagatgtcttttgatgcactgagttgtgttacaatgcta
aaaatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgt
cagcctggagtctgttttcgtctcttcagtagactccgatttcagagtatgttggaattt
cagactccagaacttctaagaatgccacttcaggagctttgtttacacacgaaactactg
gctccagttaactgtccaattgtcgactttcttatgaaagctcctgatccgccaccagct
ttaattgtgagaaatgctgtgcaaatgcttaagacaatagatgccatggatccttgggaa
gatctcactgagcttggttatcatctcactgaattacctgtagaaccacaccttggtaaa
atggtgttgtgtgctgttattttgaagtgcctggatcctattcttaccattgcttgcact
cttgcgtatcgagacccttttgtcctacctacgctggcctctcaaaagcgtgcagccatg
ctgtgtagaaaacgtttcactgcaggaacatttagtgaccatatggcgcttctcagggct
ttccaggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaac
tttctgtctcaagccacgatggaaatcatcataggaatgagaacacagttgcttggccag
cttagagcctcaggttttgttagagccagaggaggagctgatattagagatgttaatact
aactctgagaactgggctgtagttaaagctgccttagtggctgggatgtatcccaatctt
gtgcatgtggacagagaaaacctggttttgactggaccaaaggagaagaaagtgcgattt
catcctacctctgttcttagtcagcctcaatataaaaagattcccccagcaaacgggcaa
gctgcagccattcaggctctccctacggactgggttatatatgatgaaatgacgagagct
cacaggatagcaaatatcagatgctgttctgttgtaacgcctgtcactgtgtctctgttc
tgtggaccggctagattgccaagtaatgctttgcaggaacctgcatcctttcgagaagat
gtggtatctggtgataacagtgatagcgaggtggaggacaaagctaccacgaatttggca
gtactgaagctagatgaatggctccatctcaggctggaacctgaagctgctggtttgctg
ttgcaactcaggcagaagtggcatagcttatttctgcgtcatatgcgatctccttctaaa
ccgtggtctcaagctgatgaaacaactataagagcaattacagctgttttaagtactgaa
gaacagtctgcaggtttgcagcagccttcaggaattggtcagagaccaagacctatgact
tctgaagaacttcctttagcatctccctgggggtcaaccaacagtagaaaaagctcagca
gaaatggaattctctgatgactcctcgattgctgaaaaagttttaatgaaatcgacacct
gctgcgcttcaccagccaaagaagcacaaagaaaaaaaaaatttgcactccaaacgaact
tcagatgacaggtcagatcaatcatcagtgaagtctacggacagcagtagctatcctagc
ccctgcgctagtccttcttctccaatatctggaaagggttccacatctccttcaccaaga
ccaaatatgccagttcggtacttcataatgaaaagcagcaacttgcaaaatattgatatt
tctcagcagaagggtatatggtctacaacgccaagtaatgaacgaaagctaaatagagcc
ttttgggagagcagcatggtttacttgatattttctgttcaagggtctggacacttccag
ggttttgctagaatggcttcagagatagggtctgagaaaagtcaggattggggatgtgct
gtttttggaggtgtattcaaggtggaatggatccgaaaagaaagcattccttttcaattt
gcacaccatttgctcaacccttggaatgacaataagaaagtacaaataagcagagatagc
caggagctggaaccacaagttggagagcagttgctacagctttgggaccgtattcctttg
gcaggaaaaaacttgactgattga
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integrated database retrieval system
