Columba livia (rock pigeon): 102094041
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Entry
102094041 CDS
T02912
Symbol
DHX38
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102094041 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clv03041
]
102094041 (DHX38)
Enzymes [BR:
clv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102094041 (DHX38)
Spliceosome [BR:
clv03041
]
Complex C
Other components
Step II factors
102094041 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
Microtub_bd
SRP54
AAA_16
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
102094041
NCBI-ProteinID:
XP_013223243
UniProt:
A0A2I0M2D4
LinkDB
All DBs
Position
Unknown
AA seq
1145 aa
AA seq
DB search
MRQVRSQLFLSTAGLFALFCFSRQYRSVHVETPSYTGGVSEEFWERSRQRERERREHGVF
ASSKEQKERKKERSRDRDHDRKRDREERDRSRHSSRSERDGSSERSSRRSEPESPRHRPK
DAATPSRSSWEEDDSGYSXSQWESPSPTPSCRDSERSHRASSLRDTDRRDRDRSVRSRYS
DKTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRLADGEEGIAFETEEERQQWEDDQRQA
DRDWYMMDEGYDEFHNPLAYSSEDYVKKREQHLHKQRQKRISAQRRQINEDNERWETNRM
LTSGVVHRIEVDEDFEEDNSAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAI
IARKGSQLVRKHREQKERKRAQHKHWELAGTKLGDIMGIKKEEEKDELVTEDGKVDYKTE
QKFAEHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLSILRDNSIVIVVGETGSGKT
TQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGVRLGEEVGYAIRFEDCTSEN
TVIKYMTDGILLRESLREADLDNYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLVV
TSATMDADKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQVHLSGAPGD
ILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCI
VATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRAGRAGRTGP
GHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLN
SMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPA
IFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQWKNNSYSTLWCNQHFIHAKAMRKVR
EVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLH
PTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSSQENR
RRAKEEVSAMEEEMALAEEQLRARREEQEHRNPMGSARSTKIYTPGRKEQGEPLTPRRTP
ARFGL
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaagtcagaagccagctgttcctcagcactgctggacttttcgctctgttttgt
ttttctaggcagtatcgttctgtccatgtggaaacaccttcctacacagggggtgtcagc
gaggagttttgggaacgcagccggcagcgggagagggagcgtcgggaacatggtgtcttt
gcttcctccaaggaacagaaagaacgaaagaaggaacgcagcagggatcgggaccacgat
cggaaacgggaccgtgaggaacgggacagaagtcgtcacagcagcagatcagagagagat
ggctcatcggagcggagcagcaggagaagtgaaccggagagtcccagacatcggcccaaa
gatgcagccacgccatctcgctctagctgggaggaagatgacagtggctacagcnnatca
cagtgggaatctccctcacccacaccttcctgccgagactcggagcgcagccaccgggca
tcatcgctgcgggacacggaccggagggaccgggacaggtctgtgaggagcaggtactcg
gataagacaccattgcctaccccatcatacaaatacaacgagtgggctgatgaccgaaga
cacctgggctccacaccacggctgtccagagggagagggcggctggcggatggggaggag
ggcatcgcctttgagacggaggaggagcggcagcagtgggaggacgaccagcggcaagct
gaccgggactggtacatgatggacgagggctacgatgagtttcacaaccccttggcctac
tcctctgaggactacgttaagaagcgggagcagcacttgcacaagcagagacagaagcgc
atctctgcacagcggcggcagatcaatgaggataatgagcgctgggagacaaatcgcatg
ctgaccagtggtgtggttcatcggattgaagtggatgaggattttgaggaagataactct
gctaaagtacatctgttggtgcacaacctggtgccccctttcctagacggaaggattgtc
ttcaccaagcagccagagccagtcatccctgtcaaggatgccacctcagacctggccatc
atagcccggaaaggcagccagctggtgcgcaagcacagagagcagaaggagcgtaagagg
gctcagcataaacactgggagttggcaggcaccaaactgggagacattatggggatcaag
aaagaggaggaaaaggacgagctggtgacagaagatggcaaagtggattacaagactgag
cagaagtttgctgaacacatgaaagaaaaaagcgaagccagcagtgagtttgccaagaag
aaatcgatcctggagcagagacaatacctgcccatctttgctgtgcagcaggagctgctc
tccatcctcagagacaacagcattgtgattgtggtgggggagacggggagtgggaagacg
acccagctgactcagtacctccacgaggacggctacaccgactacggcatgattggctgc
acacagccacgcagggtggccgcaatgtcggtggccaagcgtgtcagtgaggagatgggg
gtgcgcctgggggaggaggtgggttatgccatccgctttgaggactgcacatctgaaaac
actgtgatcaaatacatgacagatgggattcttcttcgtgagtcactgcgagaggctgat
ctggacaactacagtgccatcatcatggatgaggcacatgagcgctcactgaataccgac
gtgctctttggcctgctccgggaggtggtggccagacgctcagatctgaagcttgttgtc
acctcagccaccatggatgcagataaatttgcctcgttctttgggaacgttcctattttc
cacattcctgggcgcactttccctgttgatattcttttcagcaagaccccacaggaggat
tatgtggaggctgcggtgaaacaagccctgcaggtccatttatctggtgctcccggggac
atccttgtcttcatgcctggccaggaggacatagaggtgacctcggagcaaattgtggag
caccttgaggagctggagaaggctcctgctcttgctgtactgcctatctattctcagcta
ccatcggacttgcaggccaagatcttccagaaggctccagatggggtcaggaagtgcatt
gttgccacaaacattgcagagacctcactgacagtggatggcatcatgtttgtgattgac
tctggctactgcaagttgaaggttttcaacccccgtataggcatggatgcactgcagatc
taccccatcagtcaagccaatgccaaccagagggcaggccgagctggccgaacaggccca
ggccactgcttcaggctctacacccagagcgcctacaagaatgagctgctgacaaccacg
gtgcccgagatccagcgcaccaaccttgccaacgtagtgcttttgctcaagtccctgggt
gtgcaggacctgctgcagttccacttcatggatccgccgcccgaggacaacatgctgaac
tccatgtaccagctgtggatcctgggggccctggataacacaggtggtctgacctcaaca
ggacgtctcatggtggaattcccactggatcctgcactctccaagatgcttattgtctcc
tgtgacatgggttgcagctctgagatcttgcttattgtctccatgttgtctgtgcctgcc
atcttttatcggcctaagggccgagaggaggagagtgaccaagtacgggagaagtttgct
gttccagagagtgatcacttgacctacctgaatgtttacctgcagtggaagaacaacagc
tattccacactgtggtgcaaccagcacttcatccatgccaaggccatgcggaaggtgcgg
gaggtgcgtgcccagctcaaggacatcatggtgcagcagcggatgagcctggcatcctgt
ggtactgactgggacattgtcaggaagtgtatctgtgctgcctatttccatcaagctgca
aagctgaagggcattggggagtatgtgaacatccgcacaggcatgccctgccacctgcac
cccacgagctctctctttggcatgggctacacgccggactacattgtgtaccatgagctg
gtgatgaccaccaaggaatacatgcagtgtgtcactgctgtggatggagagtggctggca
gagctggggcccatgttctacagtatcaaacatgctgggaagtcaagccaggagaaccgc
cgccgtgccaaggaggaggtgtctgccatggaggaggagatggctttggcggaggagcag
ctgcgtgcccgccgggaggagcaggagcaccgcaaccccatgggcagtgcgagatctact
aaaatctacacccctgggcggaaggagcagggggaacccctgacaccacgacgcacccca
gcccgctttggcctctaa
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integrated database retrieval system
