KEGG   Columba livia (rock pigeon): 102097612
Entry
102097612         CDS       T02912                                 
Symbol
TRIM42
Name
(RefSeq) tripartite motif-containing protein 42
  KO
K12018  tripartite motif-containing protein 42
Organism
clv  Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:clv00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:clv01009]
    102097612 (TRIM42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:clv04121]
    102097612 (TRIM42)
Protein phosphatases and associated proteins [BR:clv01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102097612 (TRIM42)
Ubiquitin system [BR:clv04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    102097612 (TRIM42)
SSDB
Motif
Pfam: fn3 zf-B_box Trm112p Pur_ac_phosph_N Ig_DSCAM-DSCAML_C Ig_J_second
Other DBs
NCBI-GeneID: 102097612
NCBI-ProteinID: XP_021156831
LinkDB
Position
Unknown
AA seq 728 aa
MNEDGHLCFIWPFYSSCYYLSGRSRRKKCCLCWRFLFSNEQNCSCFPCPHEEDKPCQCCH
CSCAERANCWWCCCSFASDPDCKFCCCSEENSGCQYYECKCFRSSVYEPYHSRTPGTVPL
KDVMSRFRTGDNATVVTSERKVFSHTFHDQLACPLCKQLFLQPFMLPCNHCICEKCITKS
KTRADVTEDFYIIVCPVCHKAHCLPYTNKIHLRKDYLRAKLAKKYMRRHGFLRWRFDHSE
RTVYCDTCRERRRVATRRCRTCGINYCNECLHLNHNEYGTQDHILTRAQDHEEWRCLFHS
NSNISEYCMDDHELICGLCRSSLHNNHEVIPLAVACSREAASLFDTTEKFRQVHQGVDKD
LMEVLLLKNNFKIYKDNKSKEIRNGFLKLRMALHEQEKEMMELLENTELRKQKEISEYIN
HTTGQLSYMDGLIHYSEEALKEENQFVFLQSAHSLVKEIENAVPSIFQPSPYLREDPLRK
LQLNFDELFCVLQRLVPSLTGIKQSESKAEKYPYSFNPEIMVPRHISNTHESKQATGFQN
PSLNPMLDLGVRSKDTVRSPSSTPPHHPTQNNEVCVYQDTARETPRKERKQIDRFSSPEP
TDDESVPGPVVIYQTVVYSRSAKIYWTCPTEDMDFFEVEFYEVAHIGSDNIVQMQLAGQL
SKIQQQNLEIHNLDPNTEYIFKVRAVNACGRGEWSEICKIITSDEYGKTEDRGEKQKSNH
GAPHIQNI
NT seq 2187 nt   +upstreamnt  +downstreamnt
atgaatgaagatgggcatctctgttttatctggccattctactcaagctgctattacctg
tctggccgcagcagaaggaaaaaatgctgcttgtgttggcgcttcttatttagcaatgag
cagaactgcagctgtttcccatgtccacacgaagaagacaagccttgccagtgctgccac
tgctcctgtgcagagcgtgcaaattgctggtggtgctgctgctcttttgcaagtgaccca
gactgcaaattctgctgctgcagtgaagagaactcaggatgtcaatattacgaatgcaag
tgcttcagaagctctgtttatgagccgtatcactcaagaacaccgggaactgttccgtta
aaagatgtcatgtcaaggtttagaactggggataatgcaactgtcgttacatcagaaagg
aaagtcttcagccacactttccacgaccagcttgcctgtcccctgtgtaagcagctgttt
ctccagccattcatgctgccgtgcaatcactgcatttgcgagaagtgcataactaaaagc
aagaccagagctgatgtaactgaagacttctatatcattgtatgcccagtgtgtcacaaa
gcacattgcctcccctacacaaataaaattcatctgagaaaggattacctcagagcaaaa
ctagccaagaaatacatgcgcagacatggctttctgaggtggagatttgaccatagcgaa
agaacagtctactgtgacacttgcagggagagaagaagagtggcaaccagaagatgtaga
acatgtggaattaattattgtaatgaatgtctgcatttaaatcataatgagtatggcact
caagatcacattttaaccagagcacaagatcatgaagagtggcgctgcttatttcacagc
aactcaaacatctctgaatactgtatggatgaccatgaactgatctgtgggctctgcagg
agttcgctgcacaacaatcacgaggttattcccttggcagttgcatgttcaagagaggct
gcttccctctttgacacaactgaaaaatttagacaagtacaccagggagttgataaagat
ctaatggaagttctcctgttaaaaaataatttcaagatctataaggacaacaaaagcaag
gagatcagaaatggattcttaaaattacgtatggctcttcatgaacaagaaaaggagatg
atggagttgcttgaaaacactgaacttagaaagcagaaagaaatttcagaatacataaac
catacaaccggtcagctatcctatatggacggcctcattcactactctgaagaggctctt
aaggaggaaaaccaattcgtgtttctgcaatctgcacactccttagtgaaagaaatagaa
aatgcggtaccttccattttccaacctagtccatatctaagagaagatcctttaagaaaa
cttcaactcaactttgatgaacttttttgtgttttacaaagacttgtcccatctcttact
ggaattaagcagtcagaaagtaaagcagaaaaatatccctattcttttaacccagagata
atggttccaaggcatatttcaaatactcacgaatccaagcaagcaacaggtttccaaaat
ccatctttaaatcccatgcttgatttaggtgtgcggtctaaagacactgtcagaagtcca
agctctacacctccccatcatcctacacagaataatgaagtatgtgtgtaccaggataca
gctcgtgaaactccaagaaaagaaagaaaacagattgatagattttcaagtccagaacct
acagacgatgaatcagtcccaggacctgttgttatataccagactgttgtttattcaagg
tctgccaaaatttattggacttgtcccacagaagacatggatttctttgaagtagagttt
tatgaagttgctcatattggctctgataatattgtccagatgcaactagctggtcagctg
agcaaaatacagcagcagaaccttgagatacataacctggatccaaatacagaatatatt
tttaaagtccgtgctgtcaatgcatgtggccgaggagaatggagtgagatctgtaagata
atcacatcagatgaatatgggaaaactgaagacaggggtgagaagcagaagagtaatcac
ggcgctccacatatacaaaacatatag

DBGET integrated database retrieval system