Columba livia (rock pigeon): 102097658
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Entry
102097658 CDS
T02912
Symbol
SOX5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clv03000
]
102097658 (SOX5)
Transcription factors [BR:
clv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
102097658 (SOX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
102097658
NCBI-ProteinID:
XP_021151606
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MSSKRPASPYGEADGEVAMVTSRQKVGEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLL
TQENCDHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPLKAEEGGRQSGESLSSTALGTPE
RRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPE
SLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQ
QLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDP
YPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKIPGIPQGNLGAAVSPTS
IHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPTLRINSGAGSLKSSV
PATLASPSTRANTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCR
TEKDKTTLETLTQQLAVKQSEDGKFSHAIMDFNMSGDSDGSAGVSESRIYRESRGRGSNE
PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS
KQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATA
GVVYPGAIXXXXXHLPSEHSSVSSSPEPGMPVIQSTYGIKGEEPHIKEEMQTDDVNGEIY
DEYDEEDDDPDADYGSDSENHIAGQAN
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcgaccagcctctccgtatggggaagcagatggagaggtagccatggtg
acaagcagacagaaagtgggagaagaggagagtgacgggctcccagcctttcaccttccc
ttgcatgtgagttttcccaacaagcctcactctgaggaatttcagccagtttctctgctg
acgcaagagaactgtgaccataggactcccacttctcagcacaacacaatggaagttgat
ggcaataaagtgatgtcttcatttgccccgcacaactcatctacctcacccttgaaggca
gaagaaggtgggcgtcagagtggagaatcattgtccagcacagccctgggaaccccggaa
aggcgcaaagggagcctagcagatgttgtagatacccttaagcaaagaaaaatggaagag
ctcatcaaaaatgagccagaagaaacccccagtattgaaaagctactatcaaaggactgg
aaagacaagcttcttgccatgggatcagggaactttggagaaataaaagggaccccagaa
agcctcgctgagaaagaaaggcagctcatgggtatgatcaatcagctgaccagtttgcga
gaacagctgctagcagctcatgatgaacagaagaaactggctgcatcacagatcgagaaa
caacgccaacaaatggagctggctaagcagcaacaagaacagattgcaagacaacagcag
cagctcctgcagcagcaacacaaaattaaccttcttcagcaacagatccaggtccagggt
cagctgcccccattaatgattcccgtattccctccagaccaacgaaccctagcagcagct
gcacagcaaggattccttcttcctcctggtttcagctacaaagcgggatgcagtgaccct
taccccgttcagctgatcccaactaccatggcagctgctgccgcagcaacaccaggctta
ggcccactccaactgcagcagttgtatgctgcccaacttgctgcgatgcaagtgtctccg
ggagggaagatacctggcataccccagggtaaccttggtgctgctgtatcccctaccagc
atccacacagacaagagcacaaacagccctccacccaaaagcaaggatgaagtagcccag
cctctgaacctttcagccaaacccaagacatctgatggcaagtctcccacatcacccacc
tctcctcatatgccaactctgagaataaatagtggggccggttcactaaaatcctctgtt
ccagcaacattagctagtccttcgaccagagctaacacaataggttatttaaatgaccat
gatgctgttaccaaggcaatccaggaagcccggcagatgaaggagcaacttcggagggag
caacaggtgctggatgggaaggtggctgttgtgaatagcctgggtctcaataactgcagg
acagaaaaggacaaaacaacactggagaccctgactcagcaactggcagtaaaacagagc
gaagacgggaagtttagccacgcaataatggatttcaacatgagtggagattctgacgga
agcgcaggagtttcagagtctcgaatttatcgggaatccagaggacgtggtagcaatgag
ccccatatcaagcgcccaatgaatgcattcatggtgtgggctaaagatgaacggaggaag
atccttcaagcctttcctgacatgcacaactcgaatatcagcaagatactaggctctcgc
tggaaagctatgacaaacctagagaagcagccatactatgaggaacaggcccgactcagc
aaacagcacctggagaaatacccagactacaaatacaagccaaggccgaagcgtacctgc
cttgtagatggcaaaaaattacgcattggcgagtacaaggcgatcatgcgcaacagacgc
caggagatgaggcagtattttaatgttgggcaacaagcacagattcccattgccactgcg
ggcgtagtttacccaggagccattnnnnnnnnnnnnncacatctgccctccgagcactcg
agcgtgtccagcagcccggagcccgggatgcccgtcatccagagcacttacggcatcaaa
ggagaggagcctcatatcaaggaggagatgcaaaccgatgacgtcaatggagaaatctac
gatgaatacgatgaggaagacgatgaccctgatgcggactatggcagtgacagtgaaaat
cacattgcaggccaagccaactga
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integrated database retrieval system
