KEGG   Columba livia (rock pigeon): 102097797
Entry
102097797         CDS       T02912                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
clv  Columba livia (rock pigeon)
Pathway
clv03013  Nucleocytoplasmic transport
clv03015  mRNA surveillance pathway
clv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:clv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102097797
  09122 Translation
   03013 Nucleocytoplasmic transport
    102097797
   03015 mRNA surveillance pathway
    102097797
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clv03019]
    102097797
   03041 Spliceosome [BR:clv03041]
    102097797
Enzymes [BR:clv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     102097797
Messenger RNA biogenesis [BR:clv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102097797
Spliceosome [BR:clv03041]
 Complex C
  Other components
   EJC/TREX
    102097797
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102097797
SSDB
Motif
Pfam: DEAD ResIII CMS1 BRCT
Other DBs
NCBI-GeneID: 102097797
NCBI-ProteinID: XP_005515740
LinkDB
Position
Unknown
AA seq 202 aa
MAENDVDNELLDYEDDEVENAAGGDGGEVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALA
RNKSLNLKHIKHFILDECDKML
NT seq 606 nt   +upstreamnt  +downstreamnt
atggcggaaaacgacgtggacaacgaactcctggactacgaagatgacgaagtggagaac
gcggccgggggggacgggggcgaggtgccccccaaaaaggacgtgaagggctcgtacgtg
tccatccacagctccggcttccgcgacttcctcctcaaacccgagctgctccgcgccatc
gtggactgcggcttcgagcacccctccgaggtgcagcacgagtgcatcccgcaggccatc
ctgggaatggacgtgctgtgccaggccaagtccggcatgggcaagacggccgtgttcgtg
ctggccaccttgcagcagctggaacccgtcaccggacaggtgtcggtgctggtgatgtgt
cacacgcgggagctggcgttccagatcagcaaagagtacgagcgcttctccaagtacatg
cccagcgttaaggtgtcggtgtttttcggggggctctccatcaagaaggacgaggaggtg
ctgaagaagaactgtccccacgtggtggtggggacacccgggcggatcttggccctggcg
cggaacaagagcctcaacctcaagcacatcaaacacttcatcctggacgagtgcgacaag
atgctc

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