Columba livia (rock pigeon): 102097858
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Entry
102097858 CDS
T02912
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
clv
Columba livia (rock pigeon)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
102097858
NCBI-ProteinID:
XP_021139481
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MLIHTCFFFACLPVVSHVWGRVGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEELKNASQTR
NNRRNSGAASGKNLTSSGSSAAEHSGVAEVTPPPLNAILTQPAKDRAEKKRQKGTQPKGS
GENTRNQPRAETSVTEATPTTTRSSHRAPANSEQEFLGKEKPTKDSLRRGSQFQCDTSAM
ADIVLLVDGSWSIGRNNFKLIKEFLSNLISPFSIAQDKIRVGLSQYSSDPRTEWDLSTYS
TRDQVLEAMRSLRYKGGNTFTGLALTHVLEQNLKPEAGARLEAEKLVILLTDGKSQDDAN
LAAQTLKNLGIEILAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVSRLTRVLCT
RIKEKSNKENAGSTVKDIPVNTGPQLSPTDLKISAVTSKSMHLTWIPPLRPPKKYRVVYY
PSKGGIPKEAVLDGAISSLQLSNLTSHTEYLVSVVPVYDTVVGDTLRGITSTLPLSPPRS
LRVSELSHNSIRLSWTPAQGATQYLVLCSAAPDGAEDYTTEVKVAQPEVLLDRLSPSTEY
SVAVYAMYGEDASDPASIQETTLALSPPRYLSFSELSHASVRVSWDAASPAVKSHRVTYV
SSRGSNPGEVEVPGTATSTVLRPLSSLTQYFISVRSTYDEGDSFPITGNVTTLKVPPPRA
LKVTELSGNSLRLQWEAVAASDVVVYQIKWSTAGGEKPQELSIAGNVATAVLPGLQKNTD
YKISIWAYYKDGARSDTVSVQHRTNSRSPPTNLFIDSETPTSLQIHWTPPDGRVQHYKIS
YNPVSDTGAQQTIMAPGKSSSVTLQSLLPDRAYKVIVSAVHYTGESEITATTGRTAPVLS
KFPSIRGFLPPKTEACPTIRSTHGSVRGFDMMEAFGLVEKEYASIKGVAMEPFVFSGSRT
FTLFRDTQLTLRTSDVHLFSVPPEHTISILLRLLPDTPKEPFAVWQITDEDFQPLLGVNL
DPSKKSLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSHFKVKLYLDCKKIAEK
PLHSLGSISTAGFIMLGKVTRTRGPRSGSAAFQLQSLQIVCSSVGAEDDRCCDLPALRDE
ETCPTLAPACSCTSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPSG
QQGSPGSQGITVQGPVGPPGMKGEKGDTGSPGMQGVRGLEGTAGPPGPPGPRGFQGVTGS
RGSSGEKGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVTQACERMIQTHVLKFDSFI
HEHARKPVPVWDERLKPGEPGPPGPPGPPGSNGEKGENGVPGQPGKDGYPGERGVPGPKG
EKGMPGDSKEGTPGPRGRTGPPGEVVLGKPGPKGHPGNAGPQGFPGLRGQPGQPGYPGGC
DISGCYGADRRDFIP
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcacacgtgtttcttttttgcctgcctgcctgtggtgagccacgtctggggc
cgcgtgggccaagggtctggccggttgaagctcactgttctttcggaagacaggctgcag
atgaaatggaaagagactgaagggaacatcaatggctacaaagtccgggtaaagcccatg
gcaggggactcggagcaagaagtcatgctgaaaaccaagactcccaaagccacggtgggg
gggctgagccctaccaaggaatacacgctgcaggtctacgtgctcaacggctcccaggaa
gccctgtttgccaagaggaaatttgtgatcgaggagttaaaaaatgcatcccagacgaga
aataaccgaagaaactcaggagctgcatcaggaaagaatctcacctcttcggggagctca
gctgctgagcacagtggggtggcagaggtcacccccccacccctgaatgccatcctgaca
cagccagcaaaggacagagctgaaaagaaaaggcagaaggggacacagccaaagggctca
ggagaaaacacaagaaaccagcccagagcagagaccagtgtgacagaagctacaccaaca
accacaagatcatcccaccgtgcccctgcaaactcagagcaagagtttcttggaaaagaa
aaacccaccaaggattcattgaggcgaggttcccagtttcagtgcgacacatctgcaatg
gctgatatcgtcctgcttgtggacggatcctggagcatcggacgcaacaatttcaagctc
attaaggagtttctgagcaatctaatttccccattcagtattgcccaagacaagataaga
gtagggctgtcccagtacagcagtgacccccgcacagaatgggacctgagcacttactcc
acaagggaccaggtgctggaggccatgaggagtttgcggtacaaaggtggcaacactttt
acaggtctggcactgacccacgtcctggagcagaatttgaaaccagaggctggtgcgcgg
ctggaggctgagaagcttgtgatcctcctgactgatggcaaatcccaggatgatgccaac
ctggctgctcagacattgaaaaacctgggcatagaaatacttgccattggggtgaagaat
gcggacgaggccgagctgaagcaggtggcctcggagccactggagctcaccgtgtacaac
gtgctggatttccccctgctgagttctctggtcagcaggctcacccgtgtcctctgcacc
aggatcaaagagaagagcaacaaggaaaatgcaggcagcactgtgaaggatatccctgtg
aacacaggtccccagctgagcccaactgaccttaaaatatcagccgtgacctctaagagc
atgcacttgacctggattcctcctctgaggccaccaaagaaatatcgggttgtgtattat
ccgtctaagggtggtatccccaaagaggcggttttagatggagcaatatcctctttgcaa
ctctccaatttgacctcgcacacggagtatctggtgtcggtggttcctgtctatgacaca
gttgttggggacacgctgagaggcatcacctccacattgcctttgtctccccctcgctcc
ctgcgcgtctccgagctgagccacaacagcatcaggctgagctggactccagcccaggga
gccacccaatacctggtgctctgctctgcagcccccgatggagcagaggactataccaca
gaggtgaaggtggcccagcctgaggtcctgctggacaggctgtcccccagcacagagtac
tctgtcgcggtgtacgcaatgtatggggaagatgcgagtgacccagccagcatccaggaa
accaccctggccttgagtcctcccaggtacctgagcttctccgagctcagccacgcgtcc
gttcgggtcagctgggacgctgcgtctccagccgtgaaatctcatcgcgtcacctatgtt
tctagcagagggagcaaccctggagaggtggaggttcctggcactgcaacatccactgtt
ctgagacctttgtcctccctcacccaatatttcatcagtgtccgatctacgtatgatgaa
ggggactcctttccaattactggcaacgttactaccttgaaggtccccccgccgcgggca
ctgaaggtcaccgagctctccgggaacagcctccgactgcagtgggaagctgtcgctgcc
tccgacgtggttgtctatcagattaagtggagcacagctggtggagagaaacctcaggag
ctctccattgctggaaacgtggcaactgctgtcctgccaggcctgcagaagaacaccgac
tataaaatatccatctgggcctattacaaagatggtgctcgaagtgacacagtgtctgtc
cagcacaggaccaattcccggagcccacccaccaacctcttcattgactctgagaccccc
accagcctccagatccactggacccctcctgatggccgcgtacagcactacaaaatctcc
tacaaccctgtttctgacactggtgctcagcaaacaatcatggctccaggcaaaagcagc
agtgtgaccctacaatcgttgctgcccgatcgagcctacaaggtgatcgtttctgctgtc
cactacacgggagagagcgagatcacagccacaacaggacggacggctcccgtgttgtct
aaattcccttcaattagaggattccttccacctaaaacagaggcctgccccaccatccgc
tccacccacggctccgtacgaggatttgatatgatggaagctttcggcttggtagagaag
gaatatgcctccattaaaggggtagctatggagccatttgtgttcagcggttcccggacc
ttcaccctgttcagagacacccagctcaccctgaggaccagcgatgtccatctcttctca
gtgcccccggagcacaccatcagcatcctcctgcgcctcctgcctgacacccccaaggag
ccctttgccgtctggcaaataacagatgaggatttccagcccctacttggcgttaacctt
gaccccagtaagaaatccttgacctatttcaatcacgactacaaggctgatttgcaagaa
gtctcctttgaccagcaggaagtgaagaagattttctatgggagctttcacaaggtgcat
gtggccgtgagccacttcaaggtcaagctctacttggactgtaagaaaatagcggagaaa
cctctgcacagcctcggcagcatctccaccgctggtttcatcatgctgggaaaagtgacg
cggaccaggggacccagaagcgggtctgcagcgttccagctgcagtccctgcagatcgta
tgcagcagcgtcggggcagaggatgacagatgctgtgatctccctgcgctgagagatgag
gagacctgtccaaccttagctcctgcctgctcctgtacttctggccgcccaggcttgcca
ggacctccaggcccccctggcagccctgggaggagaggaccacaaggcgagcagggagag
ccagggcccaagggtgaaccaggcccacctggacaagtggggccagagggtcctagcgga
caacaaggctctccaggttcccaaggaatcactgttcagggtcctgtggggccaccagga
atgaaaggcgaaaaaggagacactgggagtccgggcatgcagggggtgaggggacttgaa
ggcactgctgggcccccaggacctcctggaccaaggggtttccaaggggtgacaggctcc
cgaggcagcagtggagagaagggacctccaggtgacgttgggccaacagggctgccgggt
ccaaaaggagaaagaggagagaaaggggaaccacagtccttggccacaatttaccagctc
gttacccaggcttgtgagcggatgatccagactcatgtgttgaaatttgactcgttcatt
cacgaacacgcaaggaagccagttcctgtttgggatgaaaggttaaaaccaggagaaccg
ggaccaccaggtcctccaggtccccctgggagcaatggagaaaaaggagaaaacggtgtc
cctgggcagccaggcaaagatgggtatcctggagaaagaggtgtcccagggcccaaagga
gaaaaagggatgcctggagacagcaaggaagggaccccaggacccagaggcagaacaggc
ccaccaggagaagttgtgctggggaagccaggtccaaagggtcatcctgggaacgctggt
cctcaaggttttccaggtctcagagggcagcctgggcagcctggatatccagggggttgt
gatatctctggatgttatggggcagatagaagagatttcatcccctga
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