Columba livia (rock pigeon): 102098243
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Entry
102098243 CDS
T02912
Symbol
COL24A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XXIV) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
clv
Columba livia (rock pigeon)
Pathway
clv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102098243 (COL24A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clv00536
]
102098243 (COL24A1)
Glycosaminoglycan binding proteins [BR:
clv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102098243 (COL24A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102098243
NCBI-ProteinID:
XP_021149887
LinkDB
All DBs
Position
Unknown
AA seq
1752 aa
AA seq
DB search
MPWGSPSAGDPTEADECRWQEVTGGTLVMESLLDVLSEACLTLCVSLSTHCYPDYPEKSF
KHLRVILSPFKPTARHAARLWGALRASAPLLPEENRDPGGECASAATINPTAHPRFWKTV
LFIAICIAVGVAQVPKQAVDVLHRLGLVKDVQQPSETTVPSTSSLLPQGVRLTASGVVLT
SDVHIEAPITQVIPSNLGHQFTILVGLYSYRANNAFLFSIRSKNRLQFGVQLLPRKVAVY
TGGKQPVYFDYSVHNEQWHSFAIDIRDKTVSIFAECGRKYYRREILSEVETFDLDSLFTL
GRMNSHSVSFEGVICQLDIIPSAEASANYCKYVKQQCRQAETYRSLLGAPHVSDGLDDFS
KMMIDEKSQSKGISAYRREETSNTRVTNVAQIHFVSEYLESRNASASEFPEAKSLLLEAW
SEMELQEKVNLPLHQQETSKKRNLTETRTGSYPNTLDDTLEDASRQSEPSLISPVKQSKT
KSKGMDKAKQHLDEPSKKQQIFNTTLYSLAADLSLDNQLSPGQEGAFDADETYYTENSYD
IGIDNYAYDYEDLDKMFEMGSIRGPKGETGPPGPPGPPGLPGPSGKRGPRGIPGPHGNPG
LPGLPGPKGPKGDPGVSPGRANRGEKGDPGPIGFPGPPGIKGQKGLKGYPGLRGPRGEQG
LPGAAGSVGAVGYPGRQGLAGPEGNPGPKGVRGFIGPPGVAGQPGPEGERGIPGFRGKRG
PKGRQGFPGDFGNRGPPGPDGNPGIVGGVGPPGFPGLRGDMGPAGLSGPSGIPGPAGLPG
SMGQPGMKGDKGEHGLAGEPGDQGYPGDKGALGLPGPPGIRGKPGPPGKIGEPGSHGPLG
PPGPEGFPGDIGVPGLNGPEGPKGLLGDRGPPGPQGPKGIEGEVGPTGPTGGVGPRGKPG
QKGYVGEPGPEGLKGEQGDQGDLGKTGEAGSAGLPGETGPSGSLGEKGDRGNPGPIGPPG
EKGVMGYPGPPGGPGPVGPEGLPGPSGTRGPPGPQGPKGRRGPRGLDGPPGEPGTQGVKG
ERGDPGKKGVPGLIGKAGNPGERGDQGAVGLLGPPGATGDRGPMGEPGPRGQPGDAGPIG
EMGFEGPPGPEGEPGLQGEPGAKGDIGPTGKAGEPGNQGLRGEPGPPGEDGVQGKDGPKG
PEGTPGNPGQRGRLGKKGEKGQIGPPGEIGPAGESGQPGEIGPKGARGTRGPLGRLGEMG
PEGEPGIPGYGGHQGPPGPPGPPGPKGEKGYPGEDNTVLGPPGPIGEPGPSGERGDRGEP
GDEGYKGHRGLPGLRGPTGQQGPPGEPGELGEQGPKGERGSEGPTGKKGATGQAGKPGIP
GKPGPAGQKGAVGHPGPXXXXXTGKPGLSGKPGPKGDKGNSGLPGLAGYPGARGPKGLPG
MPGPMGAPGLKGEKGLLGHPGKRGKRGLPGSQGDQGPAGAAGLKGQTGEDGDQGLMGFQG
FPGPKGPAGDIGLVGILGPKGPTGQVGYIGPVGQEGVTGPAGRPGSRGEKGTRGETGPQG
PQGQPGPPGPPGPPGPRKQVDINAAVQALIQSNAALQMEKYQNTEVTLLDHSTEIFKTLH
YLSNLLHSIKNPLGTRDNPARICRDLLNCERKVADGKYWIDPNIGCPSDAIEVFCNFTAG
GQTCLTPLSVTKLEFGIGKVQMNFLHLLSSEATHSITVHCLNTPIWRLSKASGQKTSVSF
KGWNGQIFKANTLLEPKVLMDECMIEDGSWHKTQFIFHTQDTNQLPVVQVNALPHLKPGQ
QHFVESGSVCFL
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgccctggggaagccccagtgcaggggaccccactgaagctgatgaatgccggtggcag
gaggtcacaggcggcactctggtgatggaatccttgttagatgtactcagtgaggcctgc
cttacgctctgtgtctctctcagcacacattgctacccagattacccagaaaagtctttt
aagcaccttcgtgtcatcctttccccgttcaagcccacggcccgacatgcagcccggctc
tggggtgctctgagagccagtgcacccctgctccccgaggagaacagggatcctggggga
gagtgtgcctctgcagccacaatcaaccctactgctcatcctcgcttttggaaaactgtc
ctttttattgcaatatgtatagctgtgggtgttgcacaagtacccaaacaagcagtagat
gttcttcatcgactaggccttgtgaaagatgttcaacagccctcagagacgacagtgccc
tcaacatcatctctgttacctcagggtgttcgtctaaccgcatcaggagttgtactaact
agtgatgtgcatatcgaggcccccatcacacaagtcataccatcaaatctagggcatcag
ttcaccatcttagttggattgtattcttacagagcaaataatgctttccttttcagtatt
aggagcaaaaatagactgcagtttggtgtccagctgctaccaagaaaggtagcagtgtac
actggagggaagcagcctgtatactttgattatagtgttcataatgaacaatggcattca
tttgccattgacattagagacaagactgtctccatatttgctgagtgtggaaggaagtac
tataggcgggagatactttctgaagtggagacatttgatttggatagtttatttaccctg
ggaaggatgaactctcactctgtcagctttgaaggagttatatgccagctagatattatt
ccctctgcagaagcctctgcaaactattgtaaatatgtgaaacagcagtgtcgccaggct
gaaacgtatcgatctctgctaggagctccgcatgtgtctgatgggctggatgatttttcg
aagatgatgattgatgagaaaagccagtcaaaaggcatatcagcttatagaagggaagaa
acatcaaacacacgtgttaccaatgttgctcagattcactttgtatcagaatacttggag
tcaagaaacgcttctgcatcagagtttccagaggccaaatctctgctgctggaagcttgg
tctgaaatggaactccaggagaaagttaatctgcctcttcatcagcaggagacaagcaaa
aaaagaaacctcactgaaacccgcacaggatcatatccgaatactttagacgataccttg
gaagatgcaagcagacaaagtgaaccttctctgatctcccctgtaaaacaaagtaaaacc
aaaagcaagggaatggacaaagcaaaacagcatttagatgaaccaagcaaaaagcagcaa
attttcaacacaaccctgtacagtttggctgctgacctctctctggataatcagctcagt
ccggggcaggaaggtgcctttgatgctgatgagacttactacacggaaaacagttatgac
attggtattgataattatgcttatgactatgaagatcttgacaaaatgtttgaaatggga
agtatcagaggtccaaagggggaaactggacctcctggtcctccaggtcctccaggttta
cctggtccatcaggaaagagaggtcctcggggtattccaggaccacatggtaatccaggt
ttgccaggattgccaggtccaaagggccctaaaggagacccaggagtctctccaggacgg
gcaaatcgtggagaaaagggtgatccaggtcccataggatttccaggcccacctgggatc
aaaggccagaagggtctcaagggttatccgggactgcgagggccacggggtgagcaggga
cttccaggagctgctggcagtgttggggcagttggttaccctggcaggcagggcttagct
ggaccagaaggtaacccaggtcctaaaggtgtaagaggtttcattggacctccaggtgtg
gcaggacaaccaggacctgaaggagaaaggggcatcccaggcttccgtggaaaaagaggt
cctaaagggagacagggttttccaggtgactttggaaacagaggcccccctggtccagat
gggaatcctggaattgttggtggtgttggtcctcctggatttccaggactaagaggagac
atggggccggcaggactgagtggaccatcaggaattccagggcccgcgggtctcccaggg
agtatgggacagcctggaatgaaaggtgataagggtgaacatggccttgcaggagaaccg
ggagaccaggggtacccaggagacaagggtgctcttggtttaccaggacccccagggatc
agaggaaagccaggacccccagggaaaataggagaacctggatcccatggaccactgggt
cctccaggacctgagggttttccgggagatattggtgtacctggattaaatggccctgaa
ggtcctaagggacttctgggtgaccgagggcctccagggccacaaggccccaaaggaatt
gagggagaagtgggaccaactggacctactggaggagtcggcccaagaggaaaaccagga
cagaaaggttatgtaggtgaacctggaccagaaggtttaaagggagaacaaggagatcaa
ggagaccttggaaaaactggtgaagcaggatcagctggcttgcctggagaaactggacca
tctggaagccttggcgaaaagggagaccgaggcaatccaggacctataggtcctcctgga
gagaaaggtgtcatgggctaccctggtcctccaggaggccctggacctgtggggccagaa
gggttacctggaccttcagggacaagaggaccaccagggccacagggacctaagggaaga
agagggccaagaggtctagatggtcctccaggagaaccaggaacacaaggcgttaaggga
gaaagaggtgatccaggaaagaaaggagttcctgggctcattggtaaagctggaaatcca
ggagaaagaggagatcagggtgcagttggtttacttgggcctcccggagccacaggagac
aggggaccaatgggagagccagggccaagaggacaaccgggggatgctggccctattgga
gaaatgggttttgagggacctcctggccctgaaggagaacccggcctgcagggagaacca
ggtgcaaagggagacattggacccactgggaaggctggagagccaggcaaccaaggttta
aggggtgaaccaggacctccaggagaagatggtgttcaaggaaaagatggcccaaagggc
cctgaaggaacaccaggaaatccaggtcagagaggccgtttaggaaagaagggggaaaag
ggacaaattggccctcctggagaaattggacctgctggtgaatctggccaacctggagaa
attggtcccaaaggtgcaagaggaactcgaggtcccttgggacgcctaggagaaatggga
cctgaaggggagccaggaattccaggttatgggggtcaccagggtcctccagggccccca
gggcctccaggacccaaaggagaaaagggttacccaggcgaagacaatacagtccttgga
ccacctgggcccataggtgaaccaggtcctagtggtgaacgtggagacagaggagaacct
ggtgatgagggctacaagggtcatagaggtcttccagggcttagaggacctactgggcag
cagggacctccaggagagccaggtgaattgggagagcaagggccaaaaggagaaagaggt
tcagaaggacccacagggaagaaaggagcaaccggtcaggctggcaaacctggaattcct
ggaaaaccagggccagcagggcagaaaggagcagttggacaccctggaccangnnnnnnn
nnnnacactggcaagcctggcctgtcaggaaagcctggccctaagggtgataaaggaaac
tcaggcttaccgggtctggcaggttatcctggagctcgaggtcccaagggattgccaggc
atgccagggcccatgggagcacctggactaaagggtgagaaagggcttctgggtcatcca
ggaaagcgaggcaaaagaggacttccaggatcacaaggtgaccaaggaccagcaggagct
gctggactgaaaggacagactggagaagatggagaccaaggtttaatgggatttcaagga
ttcccgggtccaaaaggtcctgcaggggacattggcttagttggaattctgggcccaaaa
ggtccaacaggccaagttggatatattggccctgttggtcaagaaggtgtgacaggtcca
gctggcaggcctggatcgagaggtgaaaagggcacaaggggtgaaacggggccacaggga
cctcagggccagccagggccacctggaccacctggaccaccaggaccaagaaaacaagtg
gacatcaatgctgctgttcaagctttgattcagtcaaatgctgcactgcagatggagaaa
taccagaatactgaagtaactttactagatcacagtacagagatattcaaaacgctgcac
taccttagcaatttactgcacagcatcaagaacccccttggcacacgggataacccagca
cgtatctgcagggatttgcttaactgtgaacggaaagtggcagatggaaaatactggatt
gacccaaatattggatgtccttctgatgccattgaagttttctgcaacttcactgcaggt
ggtcagacatgtttgacgccgctgtctgtgacaaagctggagttcggcattggaaaagtg
cagatgaacttccttcatttactgagctcagaagcaacccacagcatcacagttcattgc
ctgaatacaccaatatggagattaagtaaagcgagtggccagaaaacatctgttagcttc
aaaggatggaatggtcaaatatttaaagcaaatacgctacttgaaccgaaggtgctcatg
gatgaatgcatgattgaagatggcagctggcacaagacacaattcatttttcacactcag
gacacgaaccagcttccagttgttcaagttaatgcacttcctcatctcaaacccggacag
cagcacttcgtagaaagtggttcagtgtgcttcctttag
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integrated database retrieval system
