Columba livia (rock pigeon): 106145813
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Entry
106145813 CDS
T02912
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clv03016
]
106145813 (RTCB)
Enzymes [BR:
clv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
106145813 (RTCB)
Transfer RNA biogenesis [BR:
clv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106145813 (RTCB)
Prokaryotic type
tRNA splicing ligases
106145813 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
106145813
NCBI-ProteinID:
XP_021150387
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
QLSPQVEGVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLP
DVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQA
MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK
VSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNEYAARKMGIDHKGQVCVMIHSGSRGLG
HQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAGAXXXLTRQAFAKVF
NTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTG
QPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMG
IAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
cagctgtccccgcaggtggagggcgttttctacgtgaacgaccccctggagaagctgatg
ttcgaggagctgcgcaatgcctgccgcggcggaggtgcaggtggctttttgcctgctatg
aaacagattgggaatgtggctgcactacctggcattgttcataggtcaataggccttccg
gatgtccattctggctatgggtttgccattggcaacatggctgcctttgatatgaatgat
cctgaagcagtggtgtcaccaggtggtgtcggatttgacatcaactgtggtgtccgctta
ctacgtacaaatttggatgaaagtgatgtgcagcctgtgaaggagcagctcgcccaggct
atgtttgaccacattccagttggtgtcggctccaaaggtgtcatccccatgaatgccaag
gatttggaagaggcactagagatgggtgtggactggtccctccgggaaggctatgcctgg
gcagaggacaaggagcactgtgaagaatatggaagaatgctgcaggctgaccccaacaag
gtctcctcaagagcaaagaagaggggtctgcctcagctggggaccctgggagccggaaat
cattacgccgagatccaggttgtggatgagatttacaatgaatacgctgccaggaagatg
ggcattgaccacaaagggcaggtctgcgtgatgatccacagcggcagcagaggccttggc
caccaggttgccacagatgcattggtggctatggaaaaagccatgaaacgggacaaaatc
atcgtgaatgatcgccagctggcctgtgccaggatcgcctctgcagagggacaggattac
ttgaagggaatggcaggggcnnnnnnnnttcttacaagacaggcctttgccaaagtcttc
aacacgaccccagacgaccttgatatgcacgttatctatgatgtgtctcacaacattgcc
aaagtggagcaacatgtagtggatggaaaggagcggactctactggtgcacagaaaggga
tcaaccagggccttccctcctcaccatcctcttatcgctgttgattatcaactgactgga
cagcctgttttgattggcgggactatgggcacctgtagctatgttcttactggcacagag
caaggcatgactgagaccttcggaactacttgccatggagctggtcgtgcattgtctcga
gccaaatctcgacggaacttggacttccaggatgtattggacaagctggctgacatgggc
attgccatccgtgttgcatctcccaaactggtcatggaagaggcaccagagtcttataag
aatgtgacagatgtggttaacacctgccatgcagctggcatcagcaagaaagccattaaa
ctgagacctattgctgttataaaaggctag
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