Corynebacterium lactis: CLAC_04405
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Entry
CLAC_04405 CDS
T04042
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clw
Corynebacterium lactis
Pathway
clw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAC_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clw03019
]
CLAC_04405
03009 Ribosome biogenesis [BR:
clw03009
]
CLAC_04405
Enzymes [BR:
clw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLAC_04405
Messenger RNA biogenesis [BR:
clw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLAC_04405
Ribosome biogenesis [BR:
clw03009
]
Prokaryotic type
rRNA helicases
CLAC_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
Transketolase_C
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
ALA67070
UniProt:
A0A0K2GZ55
LinkDB
All DBs
Position
996772..998958
Genome browser
AA seq
728 aa
AA seq
DB search
MRIGRVKMCDPNGETTTVNNECVGNKAQEEPQMADNEMNVNGDEIREDYNVAQEEAQGAE
APVEAVEIADEKLAAKAEEKAAGNADKDEDDDTVRFDQLDLPDEIVRAVRKVGFEKPSPI
QAATIPTLMSGRDVVGLAQTGTGKTAAFALPILARIDRSVRAPQALVLAPTRELALQVAD
SFQSFADHLGKIHVLPIYGGQAYGVQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISGLRF
LVLDEADEMLQMGFQEDVERILADTPEEKQVALFSATMPAAIRRLSKQYLTDPEEITVKS
QTRTADNIRQRFLMVSHRNKLDALTRILEVEEFEAMIMFVRTKHETEELAEKLRARGFSA
AAINGDIPQTLRERTIDQLKDGRLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHR
IGRTGRAGRSGEALLFVTPREGRLLRSIERATKSQLHEMKLPTVDEVNDSRKQKFSDDLT
EALADPQVEVFRELIEEYAEEHDTPLVDIAAAIAAQAQSGEFLMKEPPRSRRDNRRGNDR
DRDRFERDRGRGGRDGRSRGERGQGKRAEQVEFDREGMTTYRINVGRRQHVRPGAIVGAI
ANEGGLSSKDFGHIDIRGDHTLVELPSNLPQQVMDNLADTRISGQLIGLQVDDGTSVDDG
DDYRGGRDDRRGGRGGFRGDRRGGRGDRGGRGGFRGDRDRDDRGGRGGRGRGGYRGDRDG
FRGGRGRR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcgtattgggcgggtcaagatgtgcgacccaaatggtgagacaacaactgtgaacaat
gagtgtgtgggcaacaaggcccaggaagagccccaaatggctgataatgaaatgaatgta
aacggcgacgagatccgcgaggactacaacgtggcccaggaagaagcccagggcgcggag
gctccggtagaggccgtagagattgccgacgagaagcttgcagcgaaggcagaggaaaag
gctgcaggaaatgcagacaaggacgaagacgacgacactgtccgcttcgaccagctggac
ctgccggacgagattgtccgagcagtgcgcaaggttggctttgaaaagccttccccgatt
caggcagcgacgattccgaccctgatgagcggccgtgacgtcgttggcctggcgcagacc
ggtaccggtaagaccgcggcgtttgctcttccgatcctggctcgaatcgaccgcagtgtg
cgtgcgccgcaggccctcgtgcttgccccgacgcgcgagctggcactgcaggtggcggac
tccttccagtccttcgccgaccacctgggcaagattcatgtcctgccgatttacggcggg
caggcatacggcgtccagctttcgggactgcgccgtggtgcacagatcatcgttggtacc
ccgggtcgcgtcatcgatcacctggagaagggctcgctggacatctccggcctgcgtttc
ctggttctcgacgaggcagacgagatgctgcagatgggcttccaggaggacgttgagcga
atcctcgcagacaccccggaggagaagcaggttgcgctgttctcggcgaccatgccggca
gcgattcgccgtctttccaagcagtacctgactgatccggaagagattaccgtcaagtcg
cagactcgcaccgcggacaatatccgccagcgcttcctgatggtcagccaccgcaacaag
cttgacgctctgacccgcatcctcgaggtcgaggagttcgaggcgatgatcatgttcgtg
cgtaccaagcacgagaccgaggaactcgccgagaagctgcgcgcccgcggattctccgct
gccgcaatcaacggcgatatcccgcagaccctgcgcgagcgcaccattgaccagctgaag
gacggtcgcctcgacatcttggtggccaccgacgtcgctgcccgtggcctggatgttgac
cgcatctcccatgtggtcaactacgacattcctcacgacaccgagtcctacgttcaccgc
atcggccgcaccggacgtgccggccgctccggcgaggcgctgctgtttgtcaccccgcgc
gaggggcgcctgctgcgttctatcgagcgcgccaccaagtcccagctgcacgagatgaag
ctgccgaccgtcgacgaggtcaacgactcgcgcaagcagaagttctccgatgacctaacc
gaggctcttgccgatccgcaggttgaggtattccgcgagctcatcgaggaatacgccgag
gagcacgacaccccactggtagacatcgccgcagcgattgccgcccaggcccagtccggc
gagtttttgatgaaggagccgccgcgtagccgccgcgacaatcgccgtggcaacgaccgc
gaccgcgaccgcttcgagcgggaccgcggccgtggcgggcgcgatggccgctcccggggc
gagcgcggtcagggtaagcgcgccgagcaggtcgagttcgaccgtgagggcatgaccacc
taccgcattaacgtgggccgtcgtcagcacgtgcgcccgggcgccatcgtcggtgccatc
gccaacgaaggtggcctgtcctccaaggacttcggccacatcgacatccgcggcgaccac
accctggtggagctgccgtcgaacttgcctcagcaggtcatggacaatctcgccgacacc
cgtatctcgggccagctgattggcctgcaagtcgacgacggcacctccgttgacgacggc
gacgactaccgcggcggccgtgatgaccgtcgtggcggacgcggcggcttccgaggcgat
cgtcgtggcggacgcggagatcgtggcggacgcggtggattccgcggtgaccgcgatcgc
gatgatcgtggcggacgcggaggccgaggacgtggcggttaccgcggagaccgcgacggt
ttccgtggtggacgcgggcgtcgctaa
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