Corynebacterium lactis: CLAC_05420
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Entry
CLAC_05420 CDS
T04042
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
clw
Corynebacterium lactis
Pathway
clw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAC_05420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clw03019
]
CLAC_05420
Messenger RNA biogenesis [BR:
clw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLAC_05420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
BLTP1_N
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ALA67248
UniProt:
A0A0K2H004
LinkDB
All DBs
Position
1219129..1221189
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AA seq
686 aa
AA seq
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MAEGRSRARKVTRKAGPPADGDNAVEQQKKESRPRKSSSQSASARSEKSDSKSEVRKASS
NSSNSSSRGSRGGRGGRGGNNKNGSRGGRGGRGNRRNVVQSMQGADLTQRLPSPPKAPKD
GLRVVALGGISEIGRNMTVLEYKNRLIIVDCGVLFPSSDEPGVDLILPDFSYMEDKWDRV
EALVVTHGHEDHIGAIPWLLKQRADIPIIASRFTLALIQAKTQEHRQRPKVIEVNDTSHI
QRGPFDLRFFNVNHSIPECLGIVIKTGAGMVVHTGDVKMDQTPPDGKPTDLPALSRYGDE
GIDLFLCESTNATIPGFSGSEADLAPTLRRLIMDAKQRVIVAAFASNVYRVQAVIDAAVK
AGRKVAFNGRSMIRNMRIAQELGLLNAPEGTIVEMNDAARMAPHKVVLVTTGTQGEPMAA
LSRMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVINMLSQIGATVITGKDAKVHTSG
HGFAGELLFLYNAARPSNVMPIHGEWRHIRANKELAVSTGVKPENVVLAQNGVVVDLVDG
RARVVGQVPVGNLYVDGVTMGDVDADVLGERAEMREGGLITVTAVIDNRTGRPLEKPKAQ
ARGYSDDVKEVLEAVEQIVDDTLFDLAGSGEGNPYRMAQEVRRRTERMINQKWRRSPMVV
PTIVPMSSESAAEVTDDEVQESRESL
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaggacgctctcgcgcccgaaaggtaacgcgcaaggcagggccgcctgccgac
ggcgacaatgcagttgagcagcagaagaaggaatcgaggccacgtaagagctcatcgcag
tccgcttcggctcgctccgagaagtcggattccaagtcggaggtgcggaaggcctcgtcc
aattcgtccaactcgtcgtcgcgtggttcccgcggtggccggggcgggcgtggcggcaac
aacaagaatggttcccgtggcggccgtggtggccgcggcaatcgtcgtaacgtcgtccag
tcgatgcagggcgctgacctgactcagcgcctgccctccccgccgaaggccccgaaggac
ggcctgcgtgtggttgccctcggcggtatttccgagattggccgcaatatgacggttctg
gaatacaagaaccgcctgatcatcgtcgactgtggcgttctgtttccgagctcggacgag
cccggtgttgacctgattctgccggacttctcctacatggaggacaagtgggaccgtgtc
gaggccctggtcgtcacccacggccatgaggaccacattggtgctattccgtggcttctg
aagcagcgggctgacatcccgattatcgcttcgcggtttacgctggctctgattcaggcg
aagacccaggagcaccgccagcgcccgaaggtcatcgaggtcaatgacaccagccacatt
cagcgtggcccgttcgacctgcgtttcttcaacgtcaaccactccattccggagtgtctt
ggcatcgtcattaagacgggtgccggcatggtcgtgcacacgggtgacgtcaagatggac
cagactccgccggacggaaagccgacggatctgccggcgctgagccgctacggcgacgag
ggcatcgacctgttcctctgcgagtccaccaacgccaccattccgggtttctccggatcg
gaggcggacctggctccgaccctgcgccgactgattatggacgccaagcagcgcgtcatt
gtcgctgcgtttgcgtctaacgtctaccgtgtccaggccgttattgacgccgcagtaaag
gccgggcgtaaggtcgccttcaacggccgttccatgattcgtaacatgcgaatcgcccag
gagctcggccttctcaacgcaccagagggcaccatcgtcgagatgaacgatgccgcccgc
atggctccacacaaggttgtcctggttactaccggtactcagggcgagccgatggctgcg
ctgtcccgcatggcccgtcgtgagcaccgtcagattaccgtccgtgacggtgacctgatt
atcctgagctcttcgctcgtccctggcaacgaggaggccgtgttcggcgttatcaatatg
ctctcgcagattggcgcgaccgtgattaccggaaaggacgcgaaggttcacacttccggt
cacggtttcgctggcgagctactgttcctctacaacgccgcacgcccgtcgaacgttatg
ccgattcacggcgagtggcgccacattcgcgctaacaaggagctcgctgtctccactggc
gtcaagccggagaacgttgtactggctcagaatggcgtcgttgtcgatctcgtcgatggt
cgcgcccgcgttgtcggacaggttccggtcggtaacctctacgtcgatggcgtcaccatg
ggtgatgttgacgcggacgttctcggcgagcgcgcagagatgcgtgaaggcggcctgatt
actgtgaccgcagtcatcgataaccgcactggtcgcccgttggagaagccgaaggcgcag
gcccgcggttactccgacgatgtcaaggaagttctagaggccgtcgagcagattgtcgac
gacactctattcgaccttgcaggcagcggagagggtaatccttaccgtatggctcaggaa
gttcgtcgccgtactgaaaggatgattaaccagaagtggcgtcgtagcccgatggttgtt
ccgaccattgtgccgatgtcctctgaatccgcagccgaggtcactgacgacgaggtccag
gagtctcgcgaaagtctctaa
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