Cellulophaga lytica DSM 7489: Celly_0324
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Entry
Celly_0324 CDS
T01434
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cly
Cellulophaga lytica DSM 7489
Pathway
cly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celly_0324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cly03019
]
Celly_0324
03009 Ribosome biogenesis [BR:
cly03009
]
Celly_0324
Enzymes [BR:
cly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Celly_0324
Messenger RNA biogenesis [BR:
cly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Celly_0324
Ribosome biogenesis [BR:
cly03009
]
Prokaryotic type
rRNA helicases
Celly_0324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADY28159
UniProt:
F0RHQ0
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All DBs
Position
348183..349991
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AA seq
602 aa
AA seq
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MTKFEALGLDKSLLDAIVDLGFESPSEVQEKAIPILLNEDTDLVALAQTGTGKTAAFGFP
LIQKIDSSSRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITDQANQIR
RGAQIVVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNTPDEKFT
WLFSATMPREVSTIAKKFMHNPQEITVGSKNAGATTVQHEYYVVGGRDRYPALKRLADTN
PDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKALERK
LQTEFLSKKIPTGMEICEIQLHHLANKIKDTEINDEVESYLPAINEILEGVDKEDLIKKI
VSVEFTRFFDYYNKTRDLNGSDRGERGDREERGKNKAEIPTSGSVRYFINVGERDDYDWM
TLKDFLRNTVGLGKEDVFKVDVKESFSFFNTDAEHSEKVLSTFTEFKVDGRFVNVEISNN
PGGGGGRGRGGRGRGDRGRSSSSRGGRDNRSGGDRGRSRNRDNRGSRDSGGSYGNKRSKR
RY
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcattagggctagacaagtccctacttgatgctattgtagatctt
gggtttgaatcaccttcagaagtacaagaaaaagcaattccaatccttttaaatgaagac
acagacctagttgcattagcgcaaacaggtactggtaaaactgcagcttttggttttccg
ttaattcagaaaattgattctagcagcagaactactcaaggattaatactttcaccaaca
cgtgaactttgtttacaaattacaaacgagcttaaagcgtattctaaatacgaaaaagga
cttaacgtagttgcaatttacggtggtgctagtattacagaccaagcaaaccaaattaga
agaggagcacaaatagttgttgctactcctggtagaataaaagatatgattagccgtggt
atggttaacatttctaaattagattactgcgtattggatgaagcagatgaaatgttaaat
atgggcttctatgaagacattaaagacattttatctaacactccagatgaaaaatttact
tggttattctctgcaactatgccaagagaagtatctaccattgctaaaaaattcatgcac
aacccacaagaaattactgtgggatctaaaaacgctggtgcaactacagtacaacatgag
tattatgttgttggtggtagagatagataccctgcattaaaaagattagcagatactaac
cctgatattttctctgttgttttttgtagaacaaaaagagatacacaaagggttgccgaa
aaattaattgaagacggttacaatgctggtgctttacacggagatttaagtcaaaaccaa
agagatttggtaatgaacgccttccgtaaaaaacaaatacaaatgcttgttgcaacagat
gttgctgcacgtggtatagatgtagatgatattacgcacgtaataaactaccaattacct
gatgaaatagaaacatacacacaccgtagtggacgtactggtagagctggtaaatctggt
gtatctatggttattgtaactcgtagtgagttacgtaaaataaaagccttagagagaaag
ctacaaactgaatttttatcaaaaaagattccaaccggaatggaaatttgtgaaattcaa
ttgcaccatttagccaataaaattaaagatacagagattaatgatgaagtagaaagctac
ttacctgctattaatgaaatattagaaggtgtagataaagaagatcttattaaaaagatt
gtatctgtagagtttactcgtttctttgattactacaacaaaactagagacttaaatggc
tctgaccgtggagaaagaggagatcgtgaggagcgtggtaaaaacaaagcagaaatacct
acaagtggttctgtacgttactttattaatgttggtgagcgtgatgattacgattggatg
acattaaaagatttcttaagaaatactgttggtcttggtaaagaagatgtttttaaagta
gacgtaaaagagagtttctctttctttaacacagatgcagaacattctgaaaaagtatta
agtacttttactgaatttaaggtagatggcagatttgttaatgttgaaatctctaacaat
cctggaggcggtggtggccgtggaagaggcggtagaggtcgcggagacagaggccgttct
tcttcttctcgtggaggaagagataacagaagtggcggagacagaggtcgttctcgtaac
agagacaacagaggaagccgcgatagtggtggaagctacggaaacaaaagaagcaaaaga
agatactaa
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