Cellulophaga lytica DSM 7489: Celly_2813
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Entry
Celly_2813 CDS
T01434
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cly
Cellulophaga lytica DSM 7489
Pathway
cly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celly_2813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cly03019
]
Celly_2813
Enzymes [BR:
cly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Celly_2813
Messenger RNA biogenesis [BR:
cly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Celly_2813
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UTP25_NTPase-like
SNF2-rel_dom
ANM3_zf-C2H2
Motif
Other DBs
NCBI-ProteinID:
ADY30630
UniProt:
F0RBI0
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All DBs
Position
3226304..3227656
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AA seq
450 aa
AA seq
DB search
MESFSDFNLKKQLHYAIDDLGFTTPTPIQKEAFPVVMSGKDMIGIAQTGTGKTFAYMLPI
LQDLAFSKQKNPRVLILVPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQAQAVSQ
GSDIIVATPGRLYDLVLARALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPTRRQNI
MFSATMTDDVETLINDFFINPEKVSIAVSGTPLDNISQTCYAVPNFYTKANLLVHLLKDK
ETYKKVLVFVANKRFADRLFNSLEEIFSDELCVIHSNKTQNYRIRSINQFDEGINRILVT
TDVMARGLDLDKISHVINFDTPTFPENYMHRIGRTGRAEEQGNSILFYTEKEEEYKDAIE
ELMDYKIPTITIPESVEISKELIPEERPKILEHHNPINLNAEERGASFHEKKEKNKKVNK
GGSYKFEIARKYKKPKTRGDKNYNKRNKKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaatctttctctgactttaatcttaaaaaacaattgcattatgcaattgacgactta
gggtttacaactccaacacctatacaaaaagaagcttttccggtagttatgtctggtaaa
gatatgataggtattgcacaaacaggtacagggaaaacctttgcttatatgctgccaatt
ttacaagatttggctttttctaagcaaaaaaatccaagagtattaattttagtgccaaca
agagaattggttttgcaagttgtagaacaaataaacagttttgcaaagtatattaatgta
cgcgtaatgggcgtttatggtggtacaaatatgaacacgcaagcacaagcagtatctcaa
ggatcagatattattgtagcaacacctggccgtttatatgatcttgttttagcaagagct
ttgcaattaaaatctataaaaaaattagttatagatgaagtagatgtaatgctagattta
ggttttcgttttcagataactaatatttttgagttgctaccaactcgcaggcaaaacatt
atgttttctgctacaatgacagatgatgtagaaacactaataaacgacttttttataaat
cccgaaaaagtatctattgccgtaagtggtactccgttagataatatatcgcaaacttgt
tatgctgtacctaacttttataccaaagcaaatttattggtacacttgttaaaagacaaa
gaaacctataaaaaagtattagtttttgttgccaataagcgttttgcagatcgtttattt
aattctttagaagaaattttttctgatgaattatgtgtaattcactctaataaaactcaa
aattacagaatacgttctataaaccagtttgatgaaggtattaatagaatattggtaacc
acagacgttatggcacgtggtttagatttagataaaatatctcacgtaattaattttgat
acgcctacttttcctgaaaactacatgcaccgtattggtagaacaggtagagcagaagaa
caaggaaattctattttgttttacacagaaaaagaagaagaatacaaggatgctatagaa
gagttgatggattataaaataccaactattactataccagaaagtgtagaaatttctaaa
gaattaataccagaagagcgaccaaaaattttagagcaccacaatcctattaatcttaat
gcagaagaaagaggtgctagctttcatgaaaagaaagagaaaaataaaaaagtaaataaa
ggtggttcttataagtttgaaattgccagaaaatataagaaaccaaaaacaagaggagat
aaaaactataataaacgtaataagaagaagtaa
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