Cellulophaga lytica DSM 7489: Celly_3178
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Entry
Celly_3178 CDS
T01434
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cly
Cellulophaga lytica DSM 7489
Pathway
cly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celly_3178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cly03019
]
Celly_3178
03400 DNA repair and recombination proteins [BR:
cly03400
]
Celly_3178
Enzymes [BR:
cly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Celly_3178
Messenger RNA biogenesis [BR:
cly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Celly_3178
DNA repair and recombination proteins [BR:
cly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Celly_3178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Helicase_C_2
HTH_10
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
ADY30995
UniProt:
F0REI0
LinkDB
All DBs
Position
3626991..3628889
Genome browser
AA seq
632 aa
AA seq
DB search
MHKSPQDILQQYWGYASFRGSQQKIITAVLEQKDVLALLPTGGGKSVCYQVPALLQEGIC
IVVSPLIALIEDQVNSLKDKGIKALALTGGISFEEVNNLLDNCVFGNYKFLYLSPERLQQ
DLVKERLQQMNVNLIAIDEAHCISQWGNDFRPAYQNCSTLRDIFPIVPVIALTATATKKV
ALDITENLQFRNSLTIKDSFSRDNITYKVLWTEDKMYQLKQLCAQTNNSAIVYVRTRRLA
EQISNYLNTNGFATTFFHGGVPKKDKKTVLNNWLNNTTKIIVATNAFGMGIDKPDVRLVV
HYQIPDSIENYYQEAGRAGRDQQESSAILLLNKEDENQVKQQFLSVLPNIAFLKHLYNKL
NNYFQISYGEDTQQTFQLNFNNFCNTYKLKGMLTYNALKILDQHSVISLVENYNKQATVQ
FIANKPTLNQYLSTHHKLVPIIQALLRTYGGIFEYPIKINTSLLAKKITVDENTILQALE
KLQKDEIVNYTAQNSDLELTFLVPREDDQTINSFSKKVKELQQVKINNIDAILQYINNDK
ICRNVQLLAYFGEKKEKCGKCDVCISKGPSTSNSILELITSEIIDKLKNNNLSSRELIQL
LPYRQETVLEALQLLLEDNKIDINTENKYTLQ
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
gtgcataagagtccgcaagatattttacaacaatactggggctatgccagctttaggggc
tcgcaacaaaaaataattactgctgttttagagcaaaaagatgttttagctttattacct
accggaggaggaaaatctgtttgctaccaagtacccgctctattacaagagggcatttgc
attgtagtatctcccttaattgctttaattgaagaccaagtaaatagcttaaaagataaa
ggcataaaggcattggcacttaccggaggtatttcttttgaagaggtaaacaacctttta
gataattgcgtttttggcaactacaaatttttgtacttatcaccagagcgtttacaacaa
gacttggttaaagagcgcttacaacaaatgaatgtaaacctcattgcaattgatgaggca
cattgtatttctcaatggggaaacgattttaggcctgcataccaaaattgtagtacacta
agagacatttttcctattgtaccagttattgctttaactgctacagctactaaaaaagta
gcattagatattacagaaaatcttcagtttagaaactctttaactataaaagattctttc
tctagagataatattacatataaggttttatggacagaggataaaatgtaccaattaaaa
caactttgtgcacaaaccaataatagtgctattgtgtatgttagaaccagaagattagca
gaacaaatatctaactacctaaacacaaacggatttgctactactttttttcacggtggt
gttcctaaaaaagataaaaaaacagtactaaataactggctaaataatactaccaaaatt
atagtagctaccaatgcttttggtatgggtatagataaaccagatgttcgtttggttgta
cactaccaaattccagatagtatagaaaattattaccaagaagctggtagagctggtaga
gaccaacaagagtctagtgctattttacttttaaacaaagaagatgaaaaccaggttaaa
caacaatttttaagtgttttaccaaatattgcttttttaaaacacctatataataagtta
aacaactattttcagatatcatatggtgaggatacacaacagacttttcaattaaacttt
aataatttttgcaatacatataagttaaaaggaatgctaacttataatgcactaaaaata
ttagatcaacactccgtaatatcattagtagaaaactacaataaacaagccactgtacaa
tttatagctaataagcctacacttaaccaatacctaagtacccaccacaaacttgtacca
attatacaagcgttattaagaacctatggtggtatttttgagtatcctattaaaattaac
acctctttactagctaaaaaaattacagttgatgagaatacaattcttcaagcattagaa
aagcttcaaaaagatgaaattgtaaattacactgcacaaaatagcgatttagaacttaca
tttttagttcctagagaagatgaccaaacaattaattcattctctaaaaaagtaaaagaa
ttacaacaggttaaaataaataatattgatgctatactgcagtacattaataatgataaa
atttgcagaaatgtacaactactagcctattttggtgaaaaaaaagaaaaatgcggcaag
tgcgatgtgtgtattagtaaaggccccagcactagcaatagtattttagagctcataaca
tcagaaataatagataaactaaaaaataacaatttaagttctagagaattaatacaatta
ttgccttacagacaagaaacagttttagaagctttacaacttttattagaagataacaaa
atagatattaacacagaaaataaatataccctacaataa
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