Chlorobaculum limnaeum: BIU88_00395
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Entry
BIU88_00395 CDS
T04492
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
clz
Chlorobaculum limnaeum
Pathway
clz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BIU88_00395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clz03021
]
BIU88_00395
03400 DNA repair and recombination proteins [BR:
clz03400
]
BIU88_00395
Enzymes [BR:
clz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BIU88_00395
Transcription machinery [BR:
clz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BIU88_00395
DNA repair and recombination proteins [BR:
clz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BIU88_00395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AOS82743
UniProt:
A0A1D8CY64
LinkDB
All DBs
Position
90536..95008
Genome browser
AA seq
1490 aa
AA seq
DB search
MIFSQGSSPIKGDFSKIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTTKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERIIYYEVYVVINPGEPGEKQGIKKFDRLTEEQYFQIITEYEDNQDLE
DNDPAKFVAKMGGEAIHMLLKGLNLDEIAVHLRRVLKESGSEQKRADALKRLKVVESFRK
SYEPQKRTRKKTTGLFPEEESPELYIYEGNKPEYMVMEVVPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELQLHQCGLPKSMAIELFQPFV
IRRLVERGIAKSVKSAKKLIDKKDPVVWDVLEKVIDGRPVLLNRAPTLHRLGIQAFQPTL
IEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSQEAQLEASLLMLSSHNLILPQSGKPVTV
PSQDMVLGMYYLTKSRPGDTGEGQLFYSMEEVIIAYNESRVGLHAQIFVKYDGKVDQKFD
PVRLVDTLLPEEQVEKKVWLKSQIEQKRVLVTTVGRVIFNQHVPEKIGFINKLINKKVAK
ELIAQLSSEVGNVETARFLDNIKEVGFGYAMRGGLSIGLSDAIVPETKVRHIKNAQRDSA
KVIKEYNRGTLTDNERYNQIVDVWQKTSNLVADESYEKLKKDRDGFNPLYMMLDSGARGS
REQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFISTHGARKGLSDT
SLKTADAGYLTRRLHDVAQDVIVTIDDCGTTRGLHVERNIEEETSGQIKFREKIKGRVAA
RDIVDVITDNVVVKAGEIITDELADRIQDTAGVEEAEIRSVLTCESKVGICSKCYGTNLS
VHKLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGAAQGGISETETKAFYEGQVELEDVK
SVEHSIITEDGIEETRQIVIQKNGKLNIIDPDSGKVLKRYVVPHGAHINVEQGHMVRKEQ
VLFSSEPNSTQIIAEMPGFARFIDIEKGVTYKEEVDPQTGFAQHTIINWRSKLRASETRE
PRVAIVTESGEIRKTYPVPIKSNLYVEDGQKIVPGDIIAKVPRNLDRVGGDITAGLPKVT
ELFEARIPTDPAIVTEIDGYVSFGSQRRSSKEIKVKIDFGEEKVYYVQVGKHVLATEGDE
VKAGDPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQ
KVRVEEPGDTDLLPGDLIDRAAFIEANEAVAEKVRVIDRGDAPARILEGQLYKQRDITKL
NRELRRNSKLLITIEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGK
VDHLAGLKENVIVGKLIPAGTGLRKYRAIKLRNNGAEESGSVEKATVAEA
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatattttcacagggatcatcaccgatcaagggtgatttttcaaagataaagttcagc
atcgcctctccggagagcattctggcccattcgcgaggtgaggtgctcaagccggaaacc
atcaactaccgcaccttcaagccggaacgcgacggcctgatgtgcgagaaaatattcggt
cctaccaaggactgggagtgctactgcggcaaatacaagcgtgtgcgctacaaaggcatc
atctgcgaccgctgtggcgtcgaagtcaccaccaagagcgtgcgccgcgagcgcatgggc
cacatctcgctggccgtgccggtggtgcacacctggttcttccgctccgtgccgagcaag
atcggcgcgttgctcgatctctccaccaaggagctggaacgcatcatctactacgaagtg
tacgtggtcatcaaccccggcgagccgggcgagaagcagggcatcaagaagttcgaccgc
ctgaccgaggagcagtatttccagatcatcaccgagtacgaggacaaccaggatctcgaa
gataacgatccggccaagtttgtcgccaagatgggcggcgaggcgatacacatgctgctc
aaggggttgaacctcgacgagatcgccgtccaccttcgcagggtgctcaaggagagcggt
tcggagcagaagcgcgccgacgcgctcaagcgcctcaaggttgtcgagtccttccgcaag
agctacgaaccgcagaagcgcacgaggaaaaaaacgaccggtctcttccccgaagaggag
tcgccggagctgtatatctacgagggcaacaagcccgagtacatggtgatggaggtcgtg
ccggtcattccgccggaactgcgtccccttgtgccgctcgaagggggccgtttcgccacc
tccgatctgaacgatctgtaccgccgcgtgatcattcgcaacaaccgcctgaaaaagctg
attgacattcgcgcccccgaggtcatcctcaggaacgagaagcgcatgttgcaggaggcg
gtcgatgcgctcttcgacaactcgcgcaaggccaacgcggtcaagaccggcgagtcgaat
cgcccgctgaagtcgctctcagacgcactcaagggcaagcagggccgcttccgtcagaac
ctgctcggcaagcgcgtcgattactccggccgttcggttatcgtcgtcggcccggagctt
cagctccaccagtgcggtctgccaaagagcatggccattgagctgttccagcccttcgtc
atccgccgcctcgtcgagcgcggcatcgccaagtcggtgaagtcggcaaagaagctgatc
gacaagaaagacccggtggtttgggatgtgctcgaaaaggtgatcgatggacgcccggtg
ttgctgaaccgcgcgccgaccctgcaccgactcggtatacaggcgttccagccgactctc
atcgagggtaaggcgatccagcttcacccgctcgtctgtacggcgttcaacgctgacttc
gacggtgaccagatggctgtgcacgtgccgctgtcgcaggaggcgcagctcgaagcatca
ctgctcatgctttcgtcgcacaacctcattctgccgcagtccggcaagcccgtcaccgtg
ccttcgcaggacatggtgctcgggatgtactatctcaccaagtcgcgtcctggcgacacg
ggcgaaggccagcttttctattcgatggaagaggtgatcattgcctacaacgagtcgcgc
gttggacttcatgcacagattttcgtcaaatacgacggaaaggtcgatcagaagttcgat
ccggttcgcctggtcgatacgctgctgcccgaagagcaggtcgaaaagaaggtctggctg
aagagccagatcgagcagaagagagtgctcgtcaccacggtaggaagagtgattttcaac
cagcacgtgcctgaaaagattggcttcatcaacaagctgatcaacaagaaggtggccaag
gagctgatcgcccagctctccagcgaggtcggcaacgtcgaaaccgcccgtttcctcgac
aacatcaaggaggttggtttcggctacgccatgaggggcggcctctccatcggtctctcc
gacgcgatcgtgccggagaccaaggtcaggcatatcaagaacgcccagagagacagcgcc
aaggttatcaaggagtacaaccgcggcacgctgaccgataacgagcgttacaaccagatc
gtcgacgtctggcagaagacatccaacctcgtggccgacgagtcatacgagaagctcaag
aaagatcgcgacggctttaacccgctctacatgatgctcgattcgggcgcccgaggctcc
cgcgagcaggtcaggcagctcaccggcatgaggggtctgatcgcccgaccgcagaagtcg
atgtccggccagccgggcgagatcatcgagaacccgatcatctcgaacctcaaggagggg
ctgacggtgctcgaatacttcatctcgacgcacggtgcccgtaagggtctttccgatacc
tcgctcaagacggctgacgccggatacctgacgaggcgtctgcacgacgtggcgcaggat
gtgatcgtcaccatcgacgactgcggcaccacccgcggcctgcacgtggagcggaacatc
gaggaggagaccagcggccagatcaagttccgcgagaagatcaaggggcgtgttgccgca
cgcgacatcgtcgatgtcatcaccgacaatgtggtcgtcaaggcaggcgagatcattacc
gacgagcttgccgatcgcatccaggatacggcgggcgtcgaagaggcggaaatccgctcg
gtgcttacctgcgaatccaaggtgggtatctgctcgaagtgttacggcaccaacctttcg
gtgcacaagctggtcgaaatcggcgaggcggtcggcgtcatcgcggcgcagtccatcggc
gagccgggtacgcagcttactcttcgtaccttccaccagggcggcgcggcgcagggcggt
atctccgaaaccgagaccaaggcattctacgaaggccaggtcgaactcgaggatgtgaag
agcgtcgaacactcaatcatcaccgaggacggtatcgaagagacccgtcagatcgtcatc
cagaagaacggcaagctcaacatcatcgatcccgattcgggcaaggtgctcaagcgttac
gtcgttccgcatggcgcgcacattaacgtcgaacaggggcatatggtgcgcaaggagcag
gtgctcttcagcagcgagccgaacagcacccagatcatcgctgaaatgcccggttttgcc
cgctttatcgacatcgagaagggcgttacctacaaggaggaggttgacccgcagaccggc
tttgcccagcacaccatcatcaactggcgttcgaagctgcgcgcatccgagacccgtgaa
ccgcgcgtggcgattgtgaccgagtctggtgagatcaggaaaacctatccggtgccgatc
aagtccaacctctacgtagaggacggccagaagatcgtgcctggcgatattatcgccaag
gtgccgaggaacctcgaccgcgtcggcggcgacatcaccgccggtctgccgaaggtgacc
gagctgttcgaggcgcgcatcccgaccgatccggcgattgttaccgagatcgacggttat
gtgagcttcggttcacagcgccgcagcagcaaggagatcaaggtcaagatcgactttggc
gaggagaaggtgtactatgtgcaggtcggtaagcacgtgctcgccaccgaaggcgacgag
gtcaaggctggcgatccgctgaccgacggcgcggtctcgccgcaggacatcttgcgcatt
cagggtcccaacgctgtgcagcagtaccttgtcaacgaaatccagaaggtctaccagatc
aacgcgggtgtagagatcaacgacaagcacctcgaggtgattgtgcgccagatgctccag
aaggtgcgcgtcgaggagccaggtgacaccgatttgctacccggcgacctgatcgacagg
gccgccttcatcgaagcgaacgaagccgtggccgagaaggtcagggtgatcgaccgaggc
gatgctccggcaagaatactggaggggcagctttacaagcagcgtgacatcaccaagctg
aaccgcgagcttcgccggaacagcaagctgcttatcaccattgaaccggcactgcaagcc
acatcgcatcccgtgttacttggcatcacaagcgccgcgttgcagaccgaaagcgtcatt
tcagcggcctccttccaggagacaaccaaagtgcttaccgacgccgctgttgcgggtaag
gttgatcaccttgcgggtctgaaagagaacgtcattgttggcaagctcattcctgccggc
accggtctgcgcaaataccgcgcgatcaagctccgcaacaatggagccgaggaatcaggc
tccgtcgagaaagcgacggtcgctgaagcatga
DBGET
integrated database retrieval system
