Chlorobaculum limnaeum: BIU88_01775
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Entry
BIU88_01775 CDS
T04492
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
clz
Chlorobaculum limnaeum
Pathway
clz03410
Base excision repair
clz03430
Mismatch repair
clz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BIU88_01775
03430 Mismatch repair
BIU88_01775
03440 Homologous recombination
BIU88_01775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clz03400
]
BIU88_01775
DNA repair and recombination proteins [BR:
clz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BIU88_01775
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BIU88_01775
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BIU88_01775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AOS82984
UniProt:
A0A1D8D3Y6
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All DBs
Position
398673..400400
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AA seq
575 aa
AA seq
DB search
MKRYRWTRLEPEPTLVLALSEAINVSSPIAASLVNRGISSFEEARRFFRPSLDEIPSPFL
FNDMKRAVARLSKAIAGGEKIMVYGDYDVDGTSGTAMLSLFLAELGGDVCHYINDRFTEG
YGLSESGIAWAAEQGVSLIVTVDCGIRAIEEVKACAARGIDVIICDHHEAGELPEALAIL
NPKVEGCGYPFRELCGCGVALKLIQAMVEARGDDAARWRQYLDFVAVATAADMVSLQGEN
RVYLREGLALIRKSPRVSFRAMAANMKVELADFSMMNITYGIAPRINAAGRMESAGAAMQ
WLLSADEAEAHRHAAELEELNVRRREIDAEITSRAETMVAGHCASFCSSIVLYDEAWHLG
VLGIVASKLIDKYLLPTVVMGRMNGLIKGSVRSVDQLNIYDVLHECRDHLEQFGGHHQAA
GLTLRPENLEAFRRRFDEVCRELLPVEARQKALLIDADLTLDEITPNFLKVLEQFSPFGF
ANREPLFVATGCRLVGKPKLLRERHVKFTVRGERSSSFEVIAFDRPDIFTDLEACKASPV
LHLVCIPERNQWNGREYVQLRLKDLAVGGELGPAE
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgataccgatggacgcgcctcgaacccgaaccaacgctggttttggcactttcc
gaagcgattaacgtcagctcgcccattgccgcctcgctcgtcaatcgcggcatttcgagc
ttcgaggaggcccgccggttctttcgtccttcgctcgacgagattccgtcgccattcctc
ttcaatgacatgaaacgcgccgtcgcgcggctctcgaaggcgattgccggtggcgaaaaa
atcatggtctatggcgattacgatgtcgatggcacctccggcacggcgatgctgtcactg
tttctcgctgaactggggggggatgtgtgtcactacatcaacgaccgcttcaccgagggc
tacgggctttcggagagcggcatcgcctgggcggctgagcagggggtgtcgctcatcgtc
acggtcgattgcggtatccgcgccatcgaggaggtgaaggcgtgcgccgccagggggatc
gatgtcatcatctgcgaccaccacgaggcgggcgagttgccggaggcgctggcgattctc
aatccgaaggtggaggggtgcggctatccgtttcgcgagctttgcggctgcggcgtggcg
ctcaagctcatccaggcgatggtcgaagcgcggggcgacgacgcggctcgctggcggcaa
tacctcgacttcgttgccgtggcgaccgccgccgacatggtgtcgctgcagggagagaat
cgcgtctatctgcgtgaaggcctcgcgctgattcgcaaatcgcccagagtgagtttccgg
gcgatggccgcgaacatgaaggtcgagctggctgacttcagcatgatgaacatcacctac
ggtattgcgccccgcatcaacgccgccgggcggatggagtcggcgggcgcggcgatgcag
tggctcttgagtgcggacgaggcggaggcgcaccgtcacgcggcggagctggaggagctg
aatgtgcggcggcgggagatcgatgcggaaattacgtcacgcgccgaaacgatggtggcg
ggccactgcgcaagcttctgctcctcgatcgtgctctatgacgaagcgtggcacctcggc
gtgcttggcatcgtggcctcgaagcttatcgacaaatatctgttgcctaccgtcgtgatg
gggcggatgaacggcctcatcaaggggtcggtcaggagtgtcgatcagctcaacatctac
gacgtgctccacgaatgccgcgaccatctcgaacagttcggtggccaccaccaggcggcg
gggttgacgctcaggccggagaatctcgaagcgttccgccgccgattcgacgaggtgtgc
cgcgagttgctgccggtcgaagctcgccagaaggcgctcctgatcgacgctgacctcacg
ctcgacgagatcacgccgaactttctgaaggtgctcgaacagttctcacccttcggtttc
gccaaccgtgagccgctcttcgtagccaccggatgccgtctggttggcaagcccaaactg
ctgcgggagcggcacgtcaagttcacggtgcggggggaacgcagctcgtcattcgaagtg
atcgccttcgaccgccccgacatcttcaccgacctcgaagcctgcaaagcctctccggtg
ctgcacctcgtctgtattcccgaaagaaatcaatggaacggccgcgaatacgtgcagcta
agattgaaggatttggcggtggggggagaattagggcctgctgaataa
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