Chlorobaculum limnaeum: BIU88_06900
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Entry
BIU88_06900 CDS
T04492
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
clz
Chlorobaculum limnaeum
Pathway
clz03030
DNA replication
clz03430
Mismatch repair
clz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BIU88_06900
03430 Mismatch repair
BIU88_06900
03440 Homologous recombination
BIU88_06900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clz03032
]
BIU88_06900
03400 DNA repair and recombination proteins [BR:
clz03400
]
BIU88_06900
Enzymes [BR:
clz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BIU88_06900
DNA replication proteins [BR:
clz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BIU88_06900
DNA repair and recombination proteins [BR:
clz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BIU88_06900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AOS85041
UniProt:
A0A1D8D364
LinkDB
All DBs
Position
complement(1560623..1564171)
Genome browser
AA seq
1182 aa
AA seq
DB search
MEFVHLHTHTHYSMQSSPIFPGELFAACKKQGMTTVAVTDYGAMFNMPELFGQARKAEVK
LIMGAEVYLAGTDSRDGGRPATLILLIRDGVGYRNMCVILSRAARDGFSNGLPHVDRAVL
EEYREGLVCLSAAHSGLVGRALLSGNEAEAASHASWYRDLFGEHFYLELQKHGAPYEEQL
VPGTIHLAEKLGIPLVATNNVHYLDRRDSGCYRAMIANRTKERLASQNLQCLPGHENYFK
SAAEMSALFDNAHGELDNTVKIAESCSYKFIDQDPNLPQFPLPEGFDSEKEYLRHLTWEG
AREKYGSEDGAVPDDVKARVELELGVIEKMGYSSYFLIVSDLIAASRRLGYSVGPGRGSA
AGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDIDFTPVGKQKVLEYTVQKYGAE
SVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPSKPGTSLEDAFREVKELKRLV
DTEPQYQQLMQYARAMEGRARNVSMHAGAVVITNGALEEQVPLYVSNKIETEERKYADEF
DQNDIDGTKADSSDEKQVVTQFDKNCIEQAGLLKIDYLGLETLAVIDETLRLIKKRHGID
IDLEKVPIDDRQTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTTIGDIIAMSALYRPGAL
NAVIDEHRNAVDLFVDRKHGREEIDYMHPMLEEILKETYGVIVYQEQVMQISQVMGRFSL
GKADNLRKAMGKKDPKLMQKFKEEFVNGAVSIAVNEALASRIFDLMAEFAGYGFNKSHSA
AYGVLAYWTGYLKAHYTIEFVTAILNSEIGDTERMKHLTDEAKGFGIFTLPPSINKSDAL
FSVDEHKGKPCIRVGLSAIKQVGGGARAVVAARLRREGKPFLNLFDLTASVDLRAMNRKA
LESLIQAGALDEIDPNRARLLANVDKAIRFGQIQNKAVTLGQGGFFNDDFSDEQAGVHYP
DLDNAEPMPDSEKLQHEKRLVGFYLSHHPLDRFRRDWEAFANLTLDMREVTPSKLYKAIG
VIVSVKPYQDRKGKQMLFGVLEDFTGKADFTVFASVYEQYRHMLQPDEAVMLSVEAEAKD
GSLKLLVREVAPLKKVRSAMVRKVVLRIDADDSTQLGKLQQVREIFEKHKGGTPVDFEVR
ATIGSCNETLKLFARNTPIEADDELLDQLEELLGPDNVKITG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttggagttcgttcatcttcacacccacacccactactcgatgcagagcagcccgattttt
ccgggcgagcttttcgcggcctgcaaaaagcagggcatgaccacggtcgccgtgaccgat
tacggcgcgatgttcaacatgccggagctgttcggccaggcgagaaaagcggaggtgaag
ctgatcatgggggcggaggtctatctggcgggcaccgactcgcgcgacggcgggcgaccg
gccacgctcatcctgctcatccgcgacggcgtcggctaccgcaacatgtgcgtcatcctg
tcgcgggcggcgcgtgacggcttctccaacggtctgccgcacgtggatcgcgccgtgctg
gaggagtaccgcgaagggctggtctgcctctcggcggcgcactcggggcttgtcggtcgc
gccctgctctccggcaacgaagccgaagcggccagccacgcgagctggtaccgcgatctc
ttcggcgagcacttctacctcgaattgcagaaacacggcgctccgtacgaggagcagctc
gttccgggcaccatccaccttgccgaaaagcttggcattccgctcgtggcgaccaacaac
gtgcactacctcgaccggcgcgactccggctgctaccgcgccatgatcgccaaccgcacc
aaggagcggctcgccagtcagaacctccagtgcctgccgggccacgaaaactacttcaag
tcggcggcggagatgtcggcgctcttcgacaacgcccacggcgaactcgacaacaccgtg
aagatcgccgaatcgtgctcatacaaattcatcgatcaggatcccaacctgccgcaattt
ccgcttccggagggattcgacagcgaaaaagagtatctccggcacctcacctgggagggg
gcgcgagagaagtacggctcggaggatggcgcggttcccgacgatgtgaaggctcgcgtc
gagctggagctcggcgtcatcgagaagatgggctacagctcctacttcctgatcgtgagc
gatcttatcgccgcttcgcgtcgactcggctactcggtcggccccggacgcggctcggcg
gcgggcagcatcatcgcctatctgaccggcatcacccggatcgatcccttgaagtacaag
ctcctcttcgagcgcttcctcaacccggagcgtatttcgatgcccgatatcgacatcgat
tttacgccggtcggcaagcagaaggttctcgaatacaccgtgcagaagtacggcgcggag
agcgtcgccaaggttgtcgccatcggcacgcttggcgcgaaggcggccatccgcgatgcg
gggcgcgtgctcgacgtgccgctcaaggcggtcgatcagctcgccaagctggtgccgtcc
aaacccggcacctcgcttgaagacgccttccgcgaggtcaaggagctgaagcggctggtc
gataccgagccacagtaccagcagctcatgcagtatgcgcgggcgatggaggggcgggcg
cgcaatgtctcgatgcacgccggggcggtggtgatcaccaacggcgcgctcgaagagcag
gtgccgctctacgtctccaacaagatcgaaaccgaggagcgcaaatacgccgacgagttc
gaccagaacgacatcgacggcacgaaggccgacagcagcgacgagaagcaggtggtgacg
cagttcgacaagaactgcatcgagcaggcgggtctgctcaagatcgactatctcggcctc
gaaacgctcgccgtgatcgacgaaaccctgcgcctcatcaaaaagcgccacggcatcgac
atcgatctcgaaaaggtgcccatcgacgaccgccagaccttccgcatctttcaggagggc
aagatggccggcatcttccagttcgagtcttccgggatgcagagctatatgacgcgtctc
cagcccaccaccatcggcgacatcatcgccatgagcgctctctaccggcccggtgcgttg
aatgccgtcatcgacgagcaccgcaacgcggtcgatctcttcgttgatcgcaagcacggg
cgcgaggagatcgactacatgcaccccatgctcgaagagattctcaaggagacctacggc
gtcatcgtctatcaggagcaggtgatgcagatttcgcaggtgatggggcgcttctcgctc
ggcaaggccgacaacctgcgcaaggcgatgggcaagaaggatcccaagctgatgcagaag
ttcaaggaggagttcgtcaacggcgcggtgagcatcgctgtcaacgaggcgctggccagc
cggattttcgacctgatggccgagttcgcgggctacggcttcaacaagagccactcggcg
gcttacggcgtactggcgtactggacgggctacctcaaggcgcactacaccatcgaattc
gtcacggcgatcctgaacagcgaaatcggcgacaccgagcgcatgaagcacctcaccgac
gaggccaaggggttcggcatcttcacgctgccgccgtcaatcaacaagagcgatgcgctc
ttctcggttgacgagcacaagggcaagccctgtatccgcgtcggcctcagcgccatcaaa
caggtgggcggcggcgcgagagccgtggtggcggcccggttgcgccgcgaaggcaagccc
tttctcaatctcttcgatctcaccgcctcggttgatctgcgcgccatgaaccgcaaggcg
ctcgaatcgctcatccaggccggagcgctcgacgagatcgatccgaaccgcgccaggctg
ctggccaacgtggacaaggcgatcaggttcgggcagattcagaacaaggcggtcacgctc
ggccagggcggctttttcaacgacgacttcagcgacgagcaggcgggcgtgcactacccc
gatctcgacaacgccgagccgatgccagacagcgaaaagctccagcacgaaaagcggctc
gttggcttttacctcagccaccatccgctcgaccgtttccggcgcgactgggaggccttc
gcgaacctcacgctcgacatgcgcgaggtgacgccctcgaagctctacaaggcgattggc
gtgatcgtttcggtcaagccctatcaggaccggaagggcaagcagatgctttttggcgtg
ctcgaagacttcaccggcaaggcggacttcacggtcttcgccagcgtttatgagcagtac
cgccacatgctccagcccgacgaagcggtgatgctcagcgtcgaggccgaggcgaaagac
ggcagcctgaagctgctcgtgcgcgaggtcgcgccgctcaaaaaggtgcgctcggctatg
gtcagaaaggtggtgttgcgcatcgatgccgatgactccacccagctcggtaaattgcaa
caggtgcgtgaaattttcgagaagcacaaaggcggcacgccggttgatttcgaggtgcgg
gcaaccatcggttcgtgcaacgaaaccctgaagctctttgcccgcaacactccaatcgag
gccgacgacgagttgctcgatcagctcgaagagcttctcgggccggacaatgtcaaaatt
accggatag
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