Chlorobaculum limnaeum: BIU88_07680
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Entry
BIU88_07680 CDS
T04492
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
clz
Chlorobaculum limnaeum
Pathway
clz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIU88_07680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clz03019
]
BIU88_07680
03400 DNA repair and recombination proteins [BR:
clz03400
]
BIU88_07680
Enzymes [BR:
clz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIU88_07680
Messenger RNA biogenesis [BR:
clz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIU88_07680
DNA repair and recombination proteins [BR:
clz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BIU88_07680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOS85055
UniProt:
A0A1D8D4W9
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All DBs
Position
complement(1723574..1725352)
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AA seq
592 aa
AA seq
DB search
MHRIFGFRSFRPSQEEIVRALLAGRDVFAVMPTGGGKSLCYQLPAVLMPGAALVVSPLIS
LMKDQVDGARANGIRAAFLNSSLDATEQSAVLRALQSGELDLLYVAPERFALDHFRDLLL
RSRISMAIIDEAHCISEWGHDFRPDYLALSSIPEVLPGIPVAAFTATATERVQHDIVRKL
RLRDPFVLRASFDRPNLTYEVRFKEPGEAQLVSILKEFTGQSGIVYRTSRKSVNDTAAML
QKRGFRALPYHAGLDDRERRDNQEAFIRDEVDVIVATVAFGMGIDKSNVRFVIHADLPKS
IESYYQETGRAGRDGEAARCILLFSQSDIPKVRFFIDAMTDEEERQRALDSLSKVVSFAS
ATACRRRMLLDYFGETYPRDNCASCDVCLGLHELTDCTREAQMLLSAIVRTDSRFGAAHL
IDILVGRKNQKIRDFGHDRLKVYGIGKEHDKKFWRRLIDDLIARKAVGRSEGLYPMLYLL
ESGARILRAEERVELVRITEKKSVASRKSAGLEALPQDAKQLFEELRKVRKRLADEQGVP
PYVVFSDKTLAELSVLKPTTCDEMLAVSGIGEVKLDRYAGPFLRVIGEFAGG
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
ctgcaccggattttcggattccgctcgttccggcccagccaggaggagatcgtccgggcg
ctccttgccgggcgggatgtgttcgccgtcatgccgaccggcggcggcaagtcgctctgc
taccagcttcctgcggtgctcatgccgggcgcggcgctggtggtcagtccgctcatctcg
ctcatgaaggatcaggttgacggggcgcgggcgaacggcatccgggcggcctttctcaac
agctcgctcgacgctaccgaacagtccgccgtgctccgggcgctccagtccggcgaactc
gacctgctctacgtcgctcccgaacgtttcgctctcgaccacttccgcgacctcctgctt
cgctctcgcatcagcatggcgatcatcgacgaggcgcactgcatctccgagtggggccac
gacttccgccccgactacctcgccctctcctcgattcccgaagttttgcccggcattccg
gtcgccgccttcaccgccaccgcgacggagcgggtgcagcacgacatcgtccggaaactc
cgcctgcgcgatccgttcgttctgcgcgcctcgttcgaccggccaaatctcacctacgaa
gtgcgcttcaaggagccgggcgaggcgcagctcgtctcgatcctgaaagagttcacaggc
cagtcgggcatcgtctatcgcaccagccgcaagagcgtcaacgacacggcggcgatgctg
caaaagcgaggctttcgcgccttgccgtatcacgccggtctcgacgaccgggagcggcgc
gacaatcaggaggcgttcatccgcgacgaggtcgatgtgatcgtggcgaccgtggcgttc
ggcatggggatcgacaagtccaacgtgcgcttcgtcatccacgccgacctgcccaagagc
atcgagagctactaccaggagaccggccgcgccgggcgcgacggcgaggcggcccgctgc
atcttgctcttttcgcagtctgacattccgaaggtgcgcttcttcatcgacgcgatgacg
gacgaagaggagcggcagcgggcgctcgactcgctctcgaaggtggtgtccttcgcctct
gccaccgcctgccgccgccggatgctgctcgactacttcggcgaaacctatccccgcgac
aactgcgcctcgtgcgacgtctgcctcggcctgcacgagctgaccgactgcacacgcgag
gcgcagatgctgctctcggccatcgtgcgcaccgactcgcgcttcggcgcggcgcacctg
atcgacatcctcgtcggcagaaagaaccagaagatcagggatttcggccacgaccggctg
aaggtctacggcatcggcaaggagcacgacaagaagttctggcggcggctcatcgacgac
ctcatcgcccgcaaagcggttggccgctccgaggggctgtatccgatgctttacctgctc
gaaagcggcgcaaggattctcagggcggaggaacgggtcgagctggtgcggatcacggag
aagaagagcgtcgcatcccgcaaaagcgccggtctcgaagccctcccgcaagatgcgaag
cagctcttcgaggagctgcgcaaggtgcgcaaacgcctcgccgacgagcagggagtgcca
ccgtatgtggttttttcagataaaaccctcgccgagttgagtgttctcaagcccacgact
tgcgacgaaatgctcgctgtatccggcattggcgaggtgaagcttgatcggtatgcaggg
ccgtttttgcgggtgattggggagtttgctggcgggtga
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