Chlorobaculum limnaeum: BIU88_08030
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Entry
BIU88_08030 CDS
T04492
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clz
Chlorobaculum limnaeum
Pathway
clz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIU88_08030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clz03019
]
BIU88_08030
03009 Ribosome biogenesis [BR:
clz03009
]
BIU88_08030
Enzymes [BR:
clz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BIU88_08030
Messenger RNA biogenesis [BR:
clz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIU88_08030
Ribosome biogenesis [BR:
clz03009
]
Prokaryotic type
rRNA helicases
BIU88_08030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_30
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOS85064
UniProt:
A0A1D8D895
LinkDB
All DBs
Position
complement(1794937..1796868)
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AA seq
643 aa
AA seq
DB search
MSEQQENSVNFRSLALSEPLLQALEAVGYENPTPIQANTIPLLLEGRDVLGQAQTGTGKT
AAFALPALSNIDLSLTDPQVLVLAPTRELAIQVAEAFHTYAEFMPGFHVLPIYGGQDYGV
QIRNLKRGVHVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQT
PDNRQVALFSATMPPPIVRIARKYLKAPAEITIQSKTTTVETIRQRYWMVGGHHKLDALT
RILEVEPFDGIIIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLN
IVIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGLL
FAIERATRKRIELMELPSTEIVNDKRISKFKQRITDTIGAEDLEFYISMIGQYCQDHDVS
ELEAAAALAKLLQGDEPFLLSAKPEREQRPARREERESRHDREHGRDSFRDDDRREREPR
RQSKGGLYSDEKRETYRLEVGKVHDVKPGNIAGAIINEIGLDPEAVGKIVINDQYSTVEL
PAGMPNDVFQELKKVRVCGRQLRVSKMDERQGGYGDRNDRGFGGERGGNRGYGSDRGNDR
GGDRGFGGDRKKSFGKPSGGKHKKDDASFFTGFTGSKKKRMKD
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagcaagaaaattccgtgaatttccgcagcctcgcgctgtcagaaccgctg
cttcaggccctcgaagcggtgggctatgaaaacccgacccccattcaggccaataccatt
ccgctgctgctcgaaggacgcgacgtgctcggccaggcccagaccggcaccggcaagacg
gcggcgttcgcgttgccggcgctctccaatatcgatctttcccttaccgatccgcaggtg
ctcgtgctcgctccgactcgcgagttggcgatccaggtggccgaagcgttccacacctat
gccgagttcatgccgggatttcacgtgctgccgatctacggcggacaggattacggcgtg
cagatccgcaacctcaagcgcggcgtccatgtggtggtcggcacgccggggcgcgtgatg
gatcacatgcgcaagggcacgctgaacctcgacggcctgaagtgcctcgtgctcgacgag
gctgacgaaatgctgcgcatgggcttcatcgacgacgtggagtggattctcgaccagacg
ccggacaatcgccaggtcgcgcttttctcggccaccatgccgccgccgatcgtgcgcatc
gcccgcaagtacctgaaagctcccgccgaaatcaccatccagtcgaagaccacgaccgtc
gaaacgatccgccagcgctactggatggtcggcggccaccacaagctcgacgccctgacg
cgcatcctcgaagtggaaccattcgacggtatcatcatcttcgtgcgcaccaagaccgaa
accgtggcgcttgccgaaaagcttcaggctcgcggttacgccgccgccgcgctgaacgga
gacatggtgcagtcggcccgcgagcgcaccatcgagcagctcaaggacggcacgctgaac
atcgtcatcgccaccgacgtcgccgcacgcggcctcgacgttgagcgcatcagccacgtc
atcaactacgatattccgaccgacaccgagtcctatgtgcaccgcatcggcaggactggc
cgcgccggtcgcagcggcgaggcgattctgttcgtctcgccgagggagcgcgggctgctc
ttcgccatagagcgcgccacccgcaagcgcattgagctgatggagctgccttcgaccgag
atcgtcaacgacaagcgcatctcaaaattcaagcagcgcatcaccgacaccatcggcgcc
gaagacctcgaattttacatcagcatgatcggccagtactgccaggatcatgacgtatcc
gaactcgaagctgccgccgctttggccaagctcttgcagggcgacgagccgttcctgctc
tccgccaagcccgagcgcgaacaacgcccggcccgccgcgaagagcgcgagtcgcgccac
gaccgcgagcacgggcgcgactcgttccgcgacgacgaccgccgggagcgcgagccgcgc
aggcagagcaagggcggattgtactcggacgagaagcgtgaaacctaccgcctcgaggtt
ggtaaagttcacgatgtcaagccgggcaacatcgccggagcgatcatcaacgagatcggc
ctcgatcccgaagcggttggcaagatcgtcatcaacgaccagtacagcacggtcgagctg
cctgccggaatgccgaacgacgtgttccaggagctgaagaaggtcagggtttgcggacgc
cagctcagggtctcgaagatggatgagcgtcagggaggctacggcgaccggaacgaccgc
ggattcggcggtgagcgcggcggcaatcgcggctacggaagcgaccgtggcaatgatcgc
ggcggcgatcgcggtttcggcggcgaccggaagaaaagcttcggcaagccctcgggcggc
aagcacaaaaaagatgacgcttccttcttcaccggcttcactggctccaaaaagaagcgc
atgaaggactga
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