Chlorobaculum limnaeum: BIU88_12280
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Entry
BIU88_12280 CDS
T04492
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
clz
Chlorobaculum limnaeum
Brite
KEGG Orthology (KO) [BR:
clz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clz03032
]
BIU88_12280
03400 DNA repair and recombination proteins [BR:
clz03400
]
BIU88_12280
Enzymes [BR:
clz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BIU88_12280
DNA replication proteins [BR:
clz03032
]
Prokaryotic type
DNA Topoisomerases
BIU88_12280
DNA repair and recombination proteins [BR:
clz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BIU88_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AOS84835
UniProt:
A0A1D8D4G5
LinkDB
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Position
complement(2693006..2695405)
Genome browser
AA seq
799 aa
AA seq
DB search
MASKSATPSARNRTLIVVESPSKAKTINKYLGDDYTVYASVGHIKDLPKKEIGIDFDNHY
EPRYEVIAGKEKVVRQLKKLAGEADRVLIATDPDREGEAIAWHISNEIDFAKKPVFRVLF
NEITKNAIIEAIGHPKQIDYRLVRSQQTRQGLDKIVGYKISPFLWNVVYRGLSAGRVQSV
ALRLICEREIEIEAFTAQEYWTIYADFTTDAGETFRTKLVKVKGQKPEIGSGAEAEAIAS
AIQGRLFAVGEIAPKVIQRKQPLPFTTSLLQQAASNQLGFGSQKTMRTAQQLYEGIELGP
EGATGLITYMRTDSTRISAEAVAQAHDYISQQFGPEYKGFGGPGKAGKNAQDAHEAIRPT
SVTRTPESLRRHLSPDQFRLYELIWKRFVASMMAPAKIEQTRVDVEDQKKEFVFRATGNK
VLFPGFFRVYDDQKELDYEAQKSTRDEVEAEQLVKLPERLAADDKLAMSALDRKQSFTRP
PARYTEASLVKELDNHGIGRPSTYASIFSTLQERRYVELQKKKIIPTELGRDVSTILVAN
FPDLFNVRFTAEMEDELDKVASGDDEYEKVLDAFYRPLESVLSHRKSDPLIPQNRDAVLC
EKCGKGHMIVKWTTSGKFLGCSDYPKCKNIKAITTNKAKPKETGVRCPVCGEGHMLLRNG
RLGPFLACSNYPKCNTLLNLSKLRHIEPIKVPPVTTDLACAKCGAPMYLRTGKRGLWLGC
SKFPKCRGRLSWNTLDPEMQARWEKIMNEHMAAHPVVTIMMLDGKPAPMNLPIEDIILRA
EDAGLISAASEQQEAEATA
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaaaagcgcaaccccttcggccaggaacaggactctcatcgtcgtcgagtca
ccctccaaggcaaaaaccatcaacaagtaccttggtgacgattacacggtctatgcttcg
gtagggcatatcaaggacttgcccaaaaaagagatcggcatcgacttcgacaaccactac
gaaccgcgctacgaggtgatcgcgggcaaggagaaggtggtgcggcagctcaagaagctg
gccggggaggccgacagggtgctgatcgccactgaccctgatcgcgaaggcgaggccatc
gcctggcacatctcaaacgagatcgacttcgcgaagaagccggtcttccgcgtgctcttc
aacgaaatcaccaaaaacgccatcatcgaggccatcggccaccccaagcagatcgactac
cggctggtgcgctctcagcagacacggcagggactcgacaagatcgtgggctacaagatc
agcccgttcctgtggaacgttgtctatcgtggcctctcggcggggcgcgtacaatccgtt
gcgctccggttgatctgcgagcgggagatcgagatcgaggccttcacggcgcaggagtac
tggacgatctacgccgacttcaccaccgacgctggcgagaccttccgcacgaagctggtg
aaggtaaagggccagaagccggagatcggctccggcgcagaggccgaggcgattgcgtcg
gccattcagggacgcctcttcgcggtcggcgagatcgcgccgaaggtgatccagcgcaag
cagccactacccttcaccacctcgctgttgcagcaggcggcctccaaccagctcggcttc
ggctcgcagaaaacgatgcgcaccgcgcagcagctctacgaaggcatcgaactcggcccg
gagggggcgaccggtctcatcacctacatgcgtaccgactcgacccgcatcagcgccgag
gcggtcgcgcaggcgcacgactacatttcgcagcagttcggcccggagtacaagggcttc
ggcgggccgggcaaggcgggcaagaatgcgcaggatgcgcacgaagcgatccgcccgacc
tcggtgacgcgcacgcccgaatcgctccgccgccacctctcgcccgaccagttccgcctc
tacgagctgatctggaagcgcttcgtggcctcgatgatggctccggccaaaatcgagcag
acgcgcgttgacgtggaggatcagaaaaaagagttcgtcttccgcgccaccggcaacaag
gtgctcttccccggcttcttccgcgtctacgacgaccagaaggagcttgattacgaagcg
cagaagtccacccgcgacgaggtcgaagcggagcagctcgtcaagctgcccgaacggctt
gccgccgatgacaagctcgcgatgtcggcgctcgaccgcaagcagagcttcacccgtccg
cccgcccgctacaccgaagcgagcctcgtcaaggagctcgacaaccacggcatcggtcgt
ccatcgacctacgcgtcgatcttctcgacccttcaggagcggcgctacgtggagcttcag
aagaaaaagatcatcccgaccgaactgggtcgcgacgtctcgacgattctcgtggcgaac
ttccccgacctcttcaacgtccgcttcacggcggagatggaggacgaactcgacaaggtc
gcctcgggcgacgacgagtacgaaaaggtgctcgacgccttctatcgcccgctcgaatcg
gtcttgagccaccgcaaaagcgatccgctcattccgcaaaaccgcgacgcggtgctctgc
gaaaagtgcggcaaggggcacatgatcgtcaagtggacgaccagcggcaagttcctcggc
tgctcggactatccgaagtgcaagaacatcaaggcgatcaccaccaacaaggcgaagccg
aaggagaccggcgtacgctgcccggtgtgcggcgaggggcacatgctcctgcgcaacggt
cggctcggcccgttcctggcctgctcgaactacccgaagtgcaacacgctgctcaacctc
agcaagctgcggcacatcgagccgatcaaggttccgcccgtcaccaccgatctcgcctgc
gccaaatgcggtgcgccgatgtacctccgaaccggcaaacgcggcttgtggctcggctgc
tcgaaattcccgaagtgccgcggacggctctcgtggaacacgctcgatcctgagatgcag
gcccgctgggagaagatcatgaacgagcacatggccgcccatccggtggtaacgatcatg
atgctcgacggcaaacccgcgccgatgaacctccccatcgaagacatcatcctccgcgcc
gaggatgcgggcctcatcagtgctgcgagcgaacagcaggaggctgaagccacggcgtaa
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