Caldivirga maquilingensis: Cmaq_0509
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Entry
Cmaq_0509 CDS
T00611
Name
(GenBank) RNA binding S1 domain protein
KO
K07573
exosome complex component CSL4
Organism
cma
Caldivirga maquilingensis
Pathway
cma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cmaq_0509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cma03019
]
Cmaq_0509
Messenger RNA biogenesis [BR:
cma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Cmaq_0509
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Cmaq_0509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_ribbon_FGT1_2
UPF0547
Auto_anti-p27
Cas12f1-like_TNB
Zn_ribbon_6
Zn_Ribbon_TF
ZNF512_C2HC
IBR
zf-C2H2
Motif
Other DBs
NCBI-ProteinID:
ABW01354
UniProt:
A8MC48
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All DBs
Position
complement(545346..545906)
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AA seq
186 aa
AA seq
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MQGSSVSKALVTPGEELGVEEEYLPGDNAYVDSGYVKSMVLGIAEWDRVNHVVNVKPLKL
SLIRPGQIVYGKVYYFPNDKVAMVRIFAVQHQDGVRRIQAETGILYVTYASEERLSTIYD
AVGLGDLIKARVLSSKPPYHISLRGPLLGVVETRCPQCRAVIVPSTSSKITCPVCGFVFR
RKVAAS
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgcaggggtcttcagtaagtaaagccttagtcacacctggtgaggaattgggtgttgag
gaggagtatcttccaggcgataatgcgtacgttgattcaggctacgttaaatcaatggtt
cttggcattgctgagtgggatagagttaaccacgtggttaacgttaagccacttaaatta
agcctaattaggcctgggcaaatagtgtacggtaaggtgtactacttcccaaacgataag
gtcgccatggttaggatcttcgctgttcaacatcaggatggggttaggaggattcaagct
gagacgggtatactttacgtaacttatgcctccgaggagaggttaagcactatttatgat
gcggtgggtttaggggacttaattaaggcgagggttttatcaagtaagccaccataccac
ataagcctaaggggcccattactcggtgttgttgaaactaggtgtcctcaatgcagggca
gtgatagtaccatcaacatcaagtaaaataacgtgcccagtctgcggctttgtctttagg
aggaaagtggcggcatcatga
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